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1. Peressutti SR, Costagliola M, Artigas LF, Hozbor C: [A comparative study of bacterioplankton structure in Argentinian Sea waters by the 454-tag pyrosequencing method]. Rev Argent Microbiol; 2010 Oct-Dec;42(4):288-97

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] [A comparative study of bacterioplankton structure in Argentinian Sea waters by the 454-tag pyrosequencing method].
  • [Transliterated title] Estudio comparativo de la estructura del bacterioplancton en aguas del Mar Argentino mediante el método de pirosecuenciación 454 tag.
  • The present study provides the first information about diversity and abundance of microbial communities in two environments of the Argentinian Sea by the 454 - tag pyrosequencing technique.
  • We observed more than 4,600 unique bacterial sequences from 36,188 tag amplicons, forming 280 phylotypes.
  • In addition, nearly 2,700 unique sequences from more than 47,700 tags identified as Archaea, defined only 5 different phylotypes.
  • The most abundant tag sequences included previously characterized taxa, although we also retrieved a large number of highly diverse, low-abundant phylotypes which constitute a largely unexplored "rare" biosphere.
  • [MeSH-minor] Argentina. Biodiversity. Expressed Sequence Tags. Phylogeny. Phytoplankton / classification. Phytoplankton / genetics. Phytoplankton / isolation & purification. Reproducibility of Results. Species Specificity

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  • (PMID = 21229200.001).
  • [ISSN] 0325-7541
  • [Journal-full-title] Revista Argentina de microbiología
  • [ISO-abbreviation] Rev. Argent. Microbiol.
  • [Language] spa
  • [Publication-type] Comparative Study; English Abstract; Journal Article
  • [Publication-country] Argentina
  • [Chemical-registry-number] 0 / RNA, Ribosomal, 16S
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2. Solis-Coria A, Vargas-González R, Sotelo-Avila C: Rhabdomyomatous mesenchymal hamartoma presenting as a skin tag in the sternoclavicular area. Pathol Oncol Res; 2007;13(4):375-8
The Weizmann Institute of Science GeneCards and MalaCards databases. gene/protein/disease-specific - MalaCards for skin tag .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Rhabdomyomatous mesenchymal hamartoma presenting as a skin tag in the sternoclavicular area.
  • Typically, it appears as a skin tag, papule, nodule or a mass involving the face or sternal notch.
  • A 28-day-old girl presented with a 1.4 x 0.8 cm soft skin tag in the right sternoclavicular area.
  • Physical examination revealed no congenital anomalies.
  • Thin epidermis lined the outside of the tag.
  • We report a patient with a RMH in a site not previously reported and discuss the differential diagnosis.
  • [MeSH-major] Hamartoma / pathology. Skin Diseases / pathology


3. Lee WA, Martin TD, Hess PJ, Beaver TM, Huber TS: Maldeployment of the TAG thoracic endograft. J Vasc Surg; 2007 Nov;46(5):1032-5
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Maldeployment of the TAG thoracic endograft.
  • The TAG thoracic endograft is a commercially available device used for endovascular repair of thoracic aneurysms.
  • This report describes two cases of deployment failure of the TAG device and the bailout techniques used to correct the problem and complete the procedure.
  • Although this is an extremely rare occurrence, the rapid recognition of the problem and ability to correct it by using catheter-based techniques are important during endovascular treatment of thoracic aortic diseases using the TAG device.

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  • (PMID = 17980287.001).
  • [ISSN] 0741-5214
  • [Journal-full-title] Journal of vascular surgery
  • [ISO-abbreviation] J. Vasc. Surg.
  • [Language] eng
  • [Publication-type] Case Reports; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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4. Whistleblower tag may discourage reports of malpractice, says NMC. Nurs Stand; 2009 Sep 30;24(4):7

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Whistleblower tag may discourage reports of malpractice, says NMC.

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  • (PMID = 28033752.001).
  • [ISSN] 2047-9018
  • [Journal-full-title] Nursing standard (Royal College of Nursing (Great Britain) : 1987)
  • [ISO-abbreviation] Nurs Stand
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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5. Clinton V, Berkshire: Help comes with a price tag for those with disabilities. Nurs Stand; 2007 Jun 06;21(39):32

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Help comes with a price tag for those with disabilities.
  • I guess help only comes with a price tag.

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  • (PMID = 28006615.001).
  • [ISSN] 2047-9018
  • [Journal-full-title] Nursing standard (Royal College of Nursing (Great Britain) : 1987)
  • [ISO-abbreviation] Nurs Stand
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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6. Good mews for NMC as London property gets hefty price tag. Nurs Stand; 2006 Aug 16;20(49):7

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Good mews for NMC as London property gets hefty price tag.

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  • (PMID = 28086394.001).
  • [ISSN] 2047-9018
  • [Journal-full-title] Nursing standard (Royal College of Nursing (Great Britain) : 1987)
  • [ISO-abbreviation] Nurs Stand
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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7. Gautier A, Juillerat A, Heinis C, Corrêa IR Jr, Kindermann M, Beaufils F, Johnsson K: An engineered protein tag for multiprotein labeling in living cells. Chem Biol; 2008 Feb;15(2):128-36
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] An engineered protein tag for multiprotein labeling in living cells.
  • We have previously introduced the SNAP-tag as a general tool for the specific labeling of SNAP-tag fusion proteins in living cells.
  • The SNAP-tag is derived from the human DNA repair protein O6-alkylguanine-DNA alkyltransferase (AGT) and can be covalently labeled in living cells using O6-benzylguanine derivatives bearing a chemical probe.
  • Here we report the generation of an AGT-based tag, named CLIP-tag, which reacts specifically with O2-benzylcytosine derivatives.
  • Because SNAP-tag and CLIP-tag possess orthogonal substrate specificities, SNAP and CLIP fusion proteins can be labeled simultaneously and specifically with different molecular probes in living cells.


8. Masuda N, Ohtsuki H: Tag-based indirect reciprocity by incomplete social information. Proc Biol Sci; 2007 Mar 7;274(1610):689-95

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag-based indirect reciprocity by incomplete social information.
  • Although tag-based indirect reciprocity in which altruism occurs exclusively among similar flocks is a natural expectation, its mechanism has not really been established.
  • We propose a model of tag-based indirect reciprocity by assuming that each player may note strategies of others.
  • We show that tag-based altruism can evolve to eradicate other strategies, including unconditional defectors for various initial strategy configurations and parameter sets.
  • In the intermediate regime, discriminators based on tag proximity, rather than mixture of generous players and defectors, are most likely to evolve.

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  • (PMID = 17254993.001).
  • [ISSN] 0962-8452
  • [Journal-full-title] Proceedings. Biological sciences
  • [ISO-abbreviation] Proc. Biol. Sci.
  • [Language] ENG
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Other-IDs] NLM/ PMC2197208
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9. Carty NC, Nash K, Lee D, Mercer M, Gottschall PE, Meyers C, Muzyczka N, Gordon MN, Morgan D: Adeno-associated Viral (AAV) Serotype 5 Vector Mediated Gene Delivery of Endothelin-converting Enzyme Reduces Aβ Deposits in APP + PS1 Transgenic Mice. Mol Ther; 2008 Sep;16(9):1580-1586

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • In this study, we investigated the effects of an intracranial administration of a seroptype 5 recombinant adeno-associated viral vector (rAAV) containing the ECE-1 synthetic gene on amyloid deposition in amyloid precursor protein (APP) plus presenilin-1 (PS1) transgenic mice.
  • Immunohistochemical testing for the hemagglutinin (HA) tag appended to ECE revealed strong expression in areas surrounding the injection sites but minimal expression in the contralateral regions.

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  • [Copyright] Copyright © 2008 The American Society of Gene Therapy. Published by Elsevier Inc. All rights reserved.
  • (PMID = 28189012.001).
  • [ISSN] 1525-0024
  • [Journal-full-title] Molecular therapy : the journal of the American Society of Gene Therapy
  • [ISO-abbreviation] Mol. Ther.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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10. Bord A, Valsky DV, Yagel S: Prenatal sonographic diagnosis of congenital perineal skin tag: case report and review of the literature. Prenat Diagn; 2006 Nov;26(11):1065-7
The Weizmann Institute of Science GeneCards and MalaCards databases. gene/protein/disease-specific - MalaCards for skin tag .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Prenatal sonographic diagnosis of congenital perineal skin tag: case report and review of the literature.
  • BACKGROUND: Skin tags, or acrochordons, are benign, soft, fleshy tumors that are composed of hyperplastic epidermis covering a dermal connective tissue stalk.
  • METHODS: Case report of a congenital perineal skin tag that presented as a perineal tumor during second-trimester sonographic scan at 23 weeks' gestation.
  • Literature review of the medical literature using Pubmed(R) and the search terms acrochordon, fibroepithelial polyp (FEP), and skin tag.
  • The lesion was removed; pathologic examination revealed a lipomatous skin tag.
  • Literature review showed skin tags associated with different medical conditions.
  • In the present case, this was an innocuous finding.
  • [MeSH-major] Lipomatosis / ultrasonography. Skin Neoplasms / ultrasonography. Ultrasonography, Prenatal

  • MedlinePlus Health Information. consumer health - Skin Cancer.
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  • (PMID = 16952203.001).
  • [ISSN] 0197-3851
  • [Journal-full-title] Prenatal diagnosis
  • [ISO-abbreviation] Prenat. Diagn.
  • [Language] eng
  • [Publication-type] Case Reports; Journal Article; Review
  • [Publication-country] England
  • [Number-of-references] 6
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11. Lee B, Riche NH, Karlson AK, Carpendale S: SparkClouds: visualizing trends in tag clouds. IEEE Trans Vis Comput Graph; 2010 Nov-Dec;16(6):1182-9

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] SparkClouds: visualizing trends in tag clouds.
  • Tag clouds have proliferated over the web over the last decade.
  • They provide a visual summary of a collection of texts by visually depicting the tag frequency by font size.
  • In use, tag clouds can evolve as the associated data source changes over time.
  • Interesting discussions around tag clouds often include a series of tag clouds and consider how they evolve over time.
  • However, since tag clouds do not explicitly represent trends or support comparisons, the cognitive demands placed on the person for perceiving trends in multiple tag clouds are high.
  • In this paper, we introduce SparkClouds, which integrate sparklines into a tag cloud to convey trends between multiple tag clouds.
  • We present results from a controlled study that compares SparkClouds with two traditional trend visualizations—multiple line graphs and stacked bar charts—as well as Parallel Tag Clouds.

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  • (PMID = 20975157.001).
  • [ISSN] 1077-2626
  • [Journal-full-title] IEEE transactions on visualization and computer graphics
  • [ISO-abbreviation] IEEE Trans Vis Comput Graph
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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12. Durst FG, Ou HD, Löhr F, Dötsch V, Straub WE: The better tag remains unseen. J Am Chem Soc; 2008 Nov 12;130(45):14932-3
Faculty of 1000. commentaries/discussion - See the articles recommended by F1000Prime's Faculty of more than 8,000 leading experts in Biology and Medicine. (subscription/membership/fee required).

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] The better tag remains unseen.
  • Here we present a system of modular tags which allows for high level expression, sophisticated purification of full-length protein, and solubility enhancement while keeping the amount of additional resonances low.
  • This system consists of two different expression constructs and utilizes the tight binding of human calmodulin (hCaM) to the calmodulin binding peptide (CBP), which has already been used as a purification tag.

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  • (PMID = 18937478.001).
  • [ISSN] 1520-5126
  • [Journal-full-title] Journal of the American Chemical Society
  • [ISO-abbreviation] J. Am. Chem. Soc.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Calmodulin; 0 / Calmodulin-Binding Proteins; 0 / Peptide Fragments; 0 / Recombinant Fusion Proteins; EC 2.5.1.18 / Glutathione Transferase
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13. Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, Vermat T, Corthier G, Brochmann C, Willerslev E: Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding. Nucleic Acids Res; 2007 Feb 01;35(3):e14

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • DNA barcoding should provide rapid, accurate and automatable species identifications by using a standardized DNA region as a tag.
  • Based on sequences available in GenBank and sequences produced for this study, we evaluated the resolution power of the whole chloroplast trn L (UAA) intron (254-767 bp) and of a shorter fragment of this intron (the P6 loop, 10-143 bp) amplified with highly conserved primers.

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  • [Copyright] © 2006 The Author(s).
  • (PMID = 28383734.001).
  • [ISSN] 1362-4962
  • [Journal-full-title] Nucleic acids research
  • [ISO-abbreviation] Nucleic Acids Res.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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14. García-Escudero V, García-Gómez A, Gargini R, Martín-Bermejo MJ, Langa E, de Yébenes JG, Delicado A, Ávila J, Moreno-Flores MT, Lim F: Prevention of Senescence Progression in Reversibly Immortalized Human Ensheathing Glia Permits Their Survival After Deimmortalization. Mol Ther; 2010 Feb;18(2):394-403

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • We used lentivectors with Cre/loxP technology to achieve reversible gene transfer of BMI1, SV40 large T antigen (TAg), a short hairpin RNA against p53 (shp53), and the catalytic subunit of telomerase (TERT) in primary cultures of hOEG from human donor cadaver olfactory bulbs.
  • Strikingly, these were also the only cells which continued to proliferate after transgene removal by Cre recombinase delivery, whereas hOEG immortalized by shp53 or TAg in combination with TERT entered into growth arrest and died.

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  • [Copyright] Copyright © 2010 The American Society of Gene & Cell Therapy. Published by Elsevier Inc. All rights reserved.
  • (PMID = 28182940.001).
  • [ISSN] 1525-0024
  • [Journal-full-title] Molecular therapy : the journal of the American Society of Gene Therapy
  • [ISO-abbreviation] Mol. Ther.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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15. Takahashi T, Nishida T, Sakurai S, Kanda T, Sawaki A, Wada R, Hasegawa T, Hirota S: Validation of genotyping of gastrointestinal stromal tumor in Japan. J Clin Oncol; 2009 May 20;27(15_suppl):e21502

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • METHODS: Three DNA extraction methods (QIAamp, DEXPAT, or original) and four PCR methods (Ex Taq, AmpliTaq condition-1, AmpliTaq condition-2, or QIAGEN Tag) were compared using 20 paraffin-embedded specimens with special reference to sequencing data obtained from cDNA from corresponding 20 fresh GIST samples.
  • RESULTS: In evaluation of PCR method, the protocol with Ex Taq showed 100% amplication of DNA and sequence agreement, the protocol with QIAGEN Tag 99%, and the protocol with AmpliTaq condition-2 86% agreement, and the protocol with AmpliTaq condition-1 showed much less amplication and higher disagreement.

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  • (PMID = 27963392.001).
  • [ISSN] 1527-7755
  • [Journal-full-title] Journal of clinical oncology : official journal of the American Society of Clinical Oncology
  • [ISO-abbreviation] J. Clin. Oncol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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16. Lai R Sr, Feng L, Liu L, Xie L, Wu X, Zhang S, Tang X, Geng J, Chen T: The clinical pathogensis significance associated with mutation of APC MCR in colorectal neoplasms. J Clin Oncol; 2009 May 20;27(15_suppl):e15119

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • RESULTS: The codon mutations were three variations: 1493(ACG > ACA), 63/69(91.3%); 1367(CAG > TAG), 1/69(1.4%) and 1328(CAG>TAG), 5/69(7.2%).

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  • (PMID = 27960846.001).
  • [ISSN] 1527-7755
  • [Journal-full-title] Journal of clinical oncology : official journal of the American Society of Clinical Oncology
  • [ISO-abbreviation] J. Clin. Oncol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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17. Manga P, Goldberg JD, Belitskaya-Levy I, Lobach I, Polsky D, Pavlick A, Shapiro R, Berman R, Osman I, Ostrer H: Developing genetic markers for melanoma risk assessment. J Clin Oncol; 2009 May 20;27(15_suppl):9046

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • This approach is subject to recall bias and excludes at-risk groups such as those with darker skin pigmentation.
  • Candidate genes were selected based on involvement in determining melanoma predisposition factors (skin pigmentation and DNA repair capability) and previous studies showing association.
  • Three genes, ERCC1, ERCC4 (DNA repair) and MATP (skin pigmentation) were selected.
  • Tag Single Nucleotide Polymorphisms (tSNPs) were selected using Haploview (Hapmap.org) and DNA genotyped (Sequenom Inc, San Diego, CA).

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  • (PMID = 27962112.001).
  • [ISSN] 1527-7755
  • [Journal-full-title] Journal of clinical oncology : official journal of the American Society of Clinical Oncology
  • [ISO-abbreviation] J. Clin. Oncol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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18. Rasi A, Soltani-Arabshahi R, Shahbazi N: Skin tag as a cutaneous marker for impaired carbohydrate metabolism: a case-control study. Int J Dermatol; 2007 Nov;46(11):1155-9
MedlinePlus Health Information. consumer health - Skin Cancer.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Skin tag as a cutaneous marker for impaired carbohydrate metabolism: a case-control study.
  • BACKGROUND: Skin tags are common benign skin tumors usually occurring on the neck and major flexors of older people.
  • OBJECTIVE: To investigate and compare the prevalence of diabetes and impaired glucose tolerance (IGT) in patients with skin tag and a control group.
  • PATIENTS AND METHODS: A case-control study was conducted in individuals over 15 years old, comparing cases (n = 104) with at least three skin tags and age-, sex-, and body mass index (BMI)-matched controls (n = 94) without skin tag.
  • RESULTS: Patients with skin tag had higher frequency of diabetes than the control group (23.07% vs. 8.51%, chi(2)-test, P = 0.005).
  • There was a positive correlation between the total number of skin tags and the mean fasting plasma glucose (Pearson correlation, r = 0.260, P = 0.031); patients with more than 30 skin tags were particularly at an increased risk of diabetes (52.0%).
  • No correlation was found between the number of skin tags and BMI.
  • We did not find any correlation between the anatomical localization of skin tags and impaired carbohydrate metabolism, except for skin tags under the breast in women.
  • CONCLUSION: These results show an increased risk of diabetes mellitus in patients with multiple skin tags.
  • With regard to the importance of early diagnosis of diabetes, we recommend a high level of suspicion for impaired carbohydrate metabolism in patients with skin tag.
  • [MeSH-major] Blood Glucose / analysis. Carbohydrate Metabolism. Diabetes Complications. Glucose Intolerance. Skin Neoplasms / complications

  • MedlinePlus Health Information. consumer health - Blood Sugar.
  • MedlinePlus Health Information. consumer health - Diabetes Complications.
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  • (PMID = 17988334.001).
  • [ISSN] 0011-9059
  • [Journal-full-title] International journal of dermatology
  • [ISO-abbreviation] Int. J. Dermatol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Blood Glucose
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19. Hurlow J: Tag F315: an opportunity for WOC nurses. J Wound Ostomy Continence Nurs; 2006 May-Jun;33(3):296-304; discussion 304
MedlinePlus Health Information. consumer health - Urinary Tract Infections.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag F315: an opportunity for WOC nurses.
  • Of the estimated $16.3 billion spent annually, 90% is spent on management, whereas only 10% is spent on diagnosis and treatment.
  • With their June 2005 release of the F315 tag, the Centers for Medicare and Medicaid Services are taking steps to change the circumstances of this disorder.
  • This tag provides several guidelines for continence care.

  • MedlinePlus Health Information. consumer health - Urinary Incontinence.
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  • (PMID = 16717521.001).
  • [ISSN] 1071-5754
  • [Journal-full-title] Journal of wound, ostomy, and continence nursing : official publication of The Wound, Ostomy and Continence Nurses Society
  • [ISO-abbreviation] J Wound Ostomy Continence Nurs
  • [Language] ENG
  • [Publication-type] Journal Article; Review
  • [Publication-country] United States
  • [Number-of-references] 27
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20. Cai Y, Li XC, Wu XM, Wang N, Cao HW, Wei G, Zhao KC, Zheng K, Zheng J, Li Y: [Identification of HBV genotype-specific tag sequences]. Zhonghua Gan Zang Bing Za Zhi; 2010 Feb;18(2):101-4

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] [Identification of HBV genotype-specific tag sequences].
  • OBJECTIVE: To identify the HBV genotype-specific tag sequence.
  • METHODS: The large S region sequences from 930 HBV genomes were aligned to identify the genotype-specific tag sequences.
  • PCR was used to check the genotyping effect of these tags.
  • RESULTS: Two tag sequences, sequence between 149-169 and sequence between 461-483, were identified in the large S region.
  • Using primers specific to these tag sequences, the genotype of HBV can be specifically identified.
  • CONCLUSION: These tag sequences can be used for HBV genotyping.

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  • (PMID = 20196947.001).
  • [ISSN] 1007-3418
  • [Journal-full-title] Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology
  • [ISO-abbreviation] Zhonghua Gan Zang Bing Za Zhi
  • [Language] chi
  • [Publication-type] English Abstract; Journal Article
  • [Publication-country] China
  • [Chemical-registry-number] 0 / DNA Primers; 0 / Protein Precursors
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21. Tsuji S, Tanaka T, Hirabayashi N, Kato S, Akitomi J, Egashira H, Waga I, Ohtsu T: RNA aptamer binding to polyhistidine-tag. Biochem Biophys Res Commun; 2009 Aug 14;386(1):227-31
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] RNA aptamer binding to polyhistidine-tag.
  • Polyhistidine-tag (His-tag) is a powerful tool for purification of recombinant protein.
  • His-tagged protein can be affinity-purified by using resins immobilizing Ni2+ or anti-His-tag antibodies.
  • In the present study, we isolated RNA aptamers binding to His-tag.
  • In the presence of divalent cations, shot47 was substitutable for antibodies against His-tag on ELISA, immunoprecipitation, and Western blotting.

  • Hazardous Substances Data Bank. (L)-HISTIDINE .
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  • (PMID = 19520059.001).
  • [ISSN] 1090-2104
  • [Journal-full-title] Biochemical and biophysical research communications
  • [ISO-abbreviation] Biochem. Biophys. Res. Commun.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Antibodies; 0 / Aptamers, Nucleotide; 0 / Macrophage Migration-Inhibitory Factors; 0 / Proteins; 26062-48-6 / polyhistidine; 4QD397987E / Histidine; 63231-63-0 / RNA
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22. Ting CK, Lin WT, Huang YT: Multi-objective tag SNPs selection using evolutionary algorithms. Bioinformatics; 2010 Jun 1;26(11):1446-52

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Multi-objective tag SNPs selection using evolutionary algorithms.
  • A subset of SNPs (called tag SNPs) is sufficient for capturing alleles of bi-allelic and even multi-allelic variants.
  • However, accuracy and power of tag SNPs are affected by several factors, including genotyping failure, errors and tagging bias of certain alleles.
  • In addition, different sets of tag SNPs should be selected for fulfilling requirements of various genotyping platforms and projects.
  • RESULTS: This study formulates the problem of selecting tag SNPs into a four-objective optimization problem that minimizes the total amount of tag SNPs, maximizes tolerance for missing data, enlarges and balances detection power of each allele class.
  • This method provides users with great flexibility to extract different sets of tag SNPs for different platforms and scenarios (e.g. up to 100 tags and 10% missing rate).
  • In particular, a small number of additional tag SNPs can provide sufficient tolerance and balanced power given the low missing and error rates of today's genotyping platforms.

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  • (PMID = 20385729.001).
  • [ISSN] 1367-4811
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
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23. Amor-Mahjoub M, Suppini JP, Gomez-Vrielyunck N, Ladjimi M: The effect of the hexahistidine-tag in the oligomerization of HSC70 constructs. J Chromatogr B Analyt Technol Biomed Life Sci; 2006 Dec 5;844(2):328-34
Hazardous Substances Data Bank. (L)-HISTIDINE .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] The effect of the hexahistidine-tag in the oligomerization of HSC70 constructs.
  • The hexahistidine is a fusion tag used for the isolation of proteins via an immobilized metal-ion affinity chromatography (IMAC).
  • In the present study, we have purified and analyzed two constructs of the heat shock protein HSC70 in the presence or the absence of the His-tag (C30WT-His(+)/C30WT and C30DeltaL-His(+)/C30DeltaL).
  • Results from SEC analysis indicated that the His-tag promotes the dimerization of C30DeltaL-His(+) but has no effect on the elution profile of C30WT-His(+), compared to their respective untagged forms C30DeltaL and C30WT.
  • These observations were also confirmed by AU analysis which indicates that C30DeltaL is stabilized in the dimeric form in the presence of the His-tag.
  • These results emphasize the need to remove the His-tag before structural characterization of some recombinant proteins.

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  • (PMID = 16904956.001).
  • [ISSN] 1570-0232
  • [Journal-full-title] Journal of chromatography. B, Analytical technologies in the biomedical and life sciences
  • [ISO-abbreviation] J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] Netherlands
  • [Chemical-registry-number] 0 / HSP70 Heat-Shock Proteins; 0 / His-His-His-His-His-His; 0 / Mutant Proteins; 0 / Oligopeptides; 0 / Recombinant Proteins; 4QD397987E / Histidine
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24. Cowen L, Schwarz CJ: The Jolly-Seber model with tag loss. Biometrics; 2006 Sep;62(3):699-705
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] The Jolly-Seber model with tag loss.
  • Tag loss in mark-recapture experiments is a violation of one of the Jolly-Seber model assumptions.
  • We develop methodology to estimate tag retention and abundance in double-tagging mark-recapture experiments.

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  • (PMID = 16984310.001).
  • [ISSN] 0006-341X
  • [Journal-full-title] Biometrics
  • [ISO-abbreviation] Biometrics
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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25. Ao SI, Yip K, Ng M, Cheung D, Fong PY, Melhado I, Sham PC: CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. Bioinformatics; 2005 Apr 15;21(8):1735-6
SciCrunch. SciCrunch Registry: Resource: Registry .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs.
  • Cluster and set-cover algorithms are developed to obtain a set of tag single nucleotide polymorphisms (SNPs) that can represent all the known SNPs in a chromosomal region, subject to the constraint that all SNPs must have a squared correlation R2>C with at least one tag SNP, where C is specified by the user.
  • [MeSH-major] Algorithms. Chromosome Mapping / methods. DNA Mutational Analysis / methods. Expressed Sequence Tags. Pattern Recognition, Automated / methods. Polymorphism, Single Nucleotide / genetics. Software

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  • (PMID = 15585525.001).
  • [ISSN] 1367-4803
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
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26. Liu TF, Sung WK, Li Y, Liu JJ, Mittal A, Mao PL: Effective algorithms for tag SNP selection. J Bioinform Comput Biol; 2005 Oct;3(5):1089-106
NCI CPTAC Assay Portal. NCI CPTAC Assay Portal .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Effective algorithms for tag SNP selection.
  • By making use of linkage disequilibrium, we can reduce the experiment cost by genotyping a subset of SNPs, called Tag SNPs, which have a strong association with the ungenotyped SNPs, while are as independent from each other as possible.
  • The problem of selecting Tag SNPs is NP-complete; when there are large number of SNPs, in order to avoid extremely long computational time, most of the existing Tag SNP selection methods first partition the SNPs into blocks based on certain block definitions, then Tag SNPs are selected in each block by brute-force search.
  • The size of the Tag SNP set obtained in this way may usually be reduced further due to the inter-dependency among blocks.
  • This paper proposes two algorithms, TSSA and TSSD, to tackle the block-independent Tag SNP selection problem.
  • [MeSH-major] Algorithms. Chromosome Mapping / methods. DNA / genetics. DNA Mutational Analysis / methods. Expressed Sequence Tags. Polymorphism, Single Nucleotide / genetics. Sequence Alignment / methods. Sequence Analysis, DNA / methods

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  • (PMID = 16278949.001).
  • [ISSN] 0219-7200
  • [Journal-full-title] Journal of bioinformatics and computational biology
  • [ISO-abbreviation] J Bioinform Comput Biol
  • [Language] eng
  • [Publication-type] Comparative Study; Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 9007-49-2 / DNA
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27. Carson M, Johnson DH, McDonald H, Brouillette C, Delucas LJ: His-tag impact on structure. Acta Crystallogr D Biol Crystallogr; 2007 Mar;63(Pt 3):295-301
Hazardous Substances Data Bank. (L)-HISTIDINE .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] His-tag impact on structure.
  • Crystallographers are increasingly determining structures of protein constructs that include His tags.
  • Many have taken for granted that these tags have little effect on the native structure.
  • This paper surveys and compares crystal structures with and without His tags.
  • It is observed that actual refined tag residues fitted into density occur in less that 10% of the tagged sequences.
  • It is shown that these purification tags generally have no significant effect on the structure of the native protein.
  • Additional annotation in the PDB format to make tag definition explicit is suggested.

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  • (PMID = 17327666.001).
  • [ISSN] 0907-4449
  • [Journal-full-title] Acta crystallographica. Section D, Biological crystallography
  • [ISO-abbreviation] Acta Crystallogr. D Biol. Crystallogr.
  • [Language] eng
  • [Publication-type] Comparative Study; Journal Article
  • [Publication-country] Denmark
  • [Chemical-registry-number] 0 / Proteins; 4QD397987E / Histidine
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28. Härmä S, Plessky VP, Hartmann CS, Steichen W: Z-path SAW RFID tag. IEEE Trans Ultrason Ferroelectr Freq Control; 2008 Jan;55(1):208-13

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Z-path SAW RFID tag.
  • Surface acoustic wave (SAW) radio-frequency identification (RFID) tags are soon expected to be produced in very high volumes.
  • The size and cost of a SAW RFID tag will be key parameters for many applications.
  • In this work, we describe the design principles of a 2.4-GHz SAW RFID tag that is significantly smaller than earlier reported tags.
  • If the tag uses a bidirectional interdigital transducer (IDT), space for the initial delay is needed on both sides of the IDT.
  • We reduce tag size even further by using a Z-path geometry in which the same space in x-direction is used for both the initial delay and the code reflectors.

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  • (PMID = 18334326.001).
  • [ISSN] 0885-3010
  • [Journal-full-title] IEEE transactions on ultrasonics, ferroelectrics, and frequency control
  • [ISO-abbreviation] IEEE Trans Ultrason Ferroelectr Freq Control
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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29. Chuang LY, Yang CS, Ho CH, Yang CH: Tag SNP selection using particle swarm optimization. Biotechnol Prog; 2010 Mar-Apr;26(2):580-8

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag SNP selection using particle swarm optimization.
  • Therefore, it is essential to select only informative SNPs representing the original SNP distributions in the genome (tag SNP selection) for genome-wide association studies.
  • These SNPs are usually chosen from haplotypes and called haplotype tag SNPs (htSNPs).
  • The proposed method does not rely on block partitioning of the genomic region, and consistently identified tag SNPs with higher prediction accuracy than either STAMPA or SVM/STSA.
  • These results demonstrate that the BPSO method selects tag SNP with higher accuracy no matter the scale of data sets is used.

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  • (PMID = 20039435.001).
  • [ISSN] 1520-6033
  • [Journal-full-title] Biotechnology progress
  • [ISO-abbreviation] Biotechnol. Prog.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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30. Peiffer DA, Gunderson KL: Design of tag SNP whole genome genotyping arrays. Methods Mol Biol; 2009;529:51-61

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Design of tag SNP whole genome genotyping arrays.
  • Whole genome association studies have recently been enabled by combining tag SNP information derived from the International HapMap project with novel whole genome genotyping array technologies.
  • In this chapter, we provide an overview of the tag SNP-based selection strategy for Infinium whole-genome genotyping BeadChips, including the Human 1 M BeadChip.

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  • (PMID = 19381970.001).
  • [ISSN] 1064-3745
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
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31. Naumann TA, Savinov SN, Benkovic SJ: Engineering an affinity tag for genetically encoded cyclic peptides. Biotechnol Bioeng; 2005 Dec 30;92(7):820-30
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Engineering an affinity tag for genetically encoded cyclic peptides.
  • Here, we describe development, application, and the first-generation library implementation of an expressed affinity tag for a library of cyclic peptides.
  • A resulting peptide was employed as a sensitive indicator of peptide splicing, expression, and recovery as well as an affinity tag for one-step purification.
  • Specific recognition of the tag by streptavidin was also critical for an analysis of intein mutants.
  • Finally, the initially identified probe was used as a template for design of a streptavidin-responsive cyclic peptide library.

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  • [Copyright] Copyright 2005 Wiley Periodicals, Inc
  • (PMID = 16155946.001).
  • [ISSN] 0006-3592
  • [Journal-full-title] Biotechnology and bioengineering
  • [ISO-abbreviation] Biotechnol. Bioeng.
  • [Language] eng
  • [Grant] United States / NIGMS NIH HHS / GM / 5F32GM068267-02
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Peptide Library; 0 / Peptides, Cyclic; 9013-20-1 / Streptavidin
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32. Spector L, Klein J: Genetic stability and territorial structure facilitate the evolution of tag-mediated altruism. Artif Life; 2006;12(4):553-60
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Genetic stability and territorial structure facilitate the evolution of tag-mediated altruism.
  • Recent work has demonstrated that altruistic donation can evolve in surprisingly simple models, in which agents base their decisions to donate solely on the similarity of evolved "tags" relative to evolved tag-difference tolerances.
  • There is disagreement, however, about the conditions under which tag-mediated altruism will in fact evolve.
  • Here we vary two critical parameters in a standard model of tag-mediated altruism-genetic stability and territorial structure-and show that altruism evolves in a wide range of conditions.

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  • (PMID = 16953785.001).
  • [ISSN] 1064-5462
  • [Journal-full-title] Artificial life
  • [ISO-abbreviation] Artif. Life
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] United States
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33. Stauber J, Ayed ME, Wisztorski M, Salzet M, Fournier I: Specific MALDI-MSI: Tag-Mass. Methods Mol Biol; 2010;656:339-61
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Specific MALDI-MSI: Tag-Mass.
  • However, some limitations still exist due to physical and chemical aspects, and sensitivity of certain compounds is very low.
  • These techniques of targeted imaging using Tag-Mass molecules allow the multiplex detection of compounds like antibodies or oligonucleotides.

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  • (PMID = 20680601.001).
  • [ISSN] 1940-6029
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / RNA, Messenger
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34. Peyser BD, Irizarry R, Spencer FA: Statistical analysis of fitness data determined by TAG hybridization on microarrays. Methods Mol Biol; 2008;416:369-81
Saccharomyces Genome Database. Saccharomyces Genome Database .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Statistical analysis of fitness data determined by TAG hybridization on microarrays.
  • TAG, or bar-code, microarrays allow measurement of the oligonucleotide sequences (TAGs) that mark each strain of deletion mutants in the Saccharomyces cerevisiae yeast knockout (YKO) collection.
  • Comparison of genomic DNA from pooled YKO samples allows estimation of relative abundance of TAGs marking each deletion strain.
  • Features of TAG hybridizations create unique challenges for analysis.
  • Analysis is complicated by the presence of two TAGs in most YKO strains and the hybridization behavior of TAGs that may differ in sequence from array probes.
  • The oligonucleotide size of labeled TAGs also results in difficulty with contaminating sequences that cause reduced specificity.
  • We present methods for analysis that approach these unique features of TAG hybridizations.

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  • (PMID = 18392981.001).
  • [ISSN] 1064-3745
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Grant] United States / NIGMS NIH HHS / GM / GM 007445; United States / NIGMS NIH HHS / GM / GM 62368; United States / NHGRI NIH HHS / HG / HG 02432
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / DNA Probes
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35. Hao K: Genome-wide selection of tag SNPs using multiple-marker correlation. Bioinformatics; 2007 Dec 1;23(23):3178-84
Coriell Cell Repositories. culture/stock collections - Coriell Cell Repositories .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Genome-wide selection of tag SNPs using multiple-marker correlation.
  • MOTIVATIONS: The tag SNP approach is a valuable tool in whole genome association studies, and a variety of algorithms have been proposed to identify the optimal tag SNP set.
  • Currently, most tag SNP selection is based on two-marker (pairwise) linkage disequilibrium (LD).
  • Recent literature has shown that multiple-marker LD also contains useful information that can further increase the genetic coverage of the tag SNP set.
  • Thus, tag SNP selection methods that incorporate multiple-marker LD are expected to have advantages in terms of genetic coverage and statistical power.
  • RESULTS: We propose a novel algorithm to select tag SNPs in an iterative procedure.
  • In each iteration loop, the SNP that captures the most neighboring SNPs (through pair-wise and multiple-marker LD) is selected as a tag SNP.
  • Benchmarked using HapMap release 21, our algorithm outperforms standard pair-wise LD approach in several aspects. (i) It improves genetic coverage (e.g. by 7.2% for 200 K tag SNPs in HapMap CEU) compared to its conventional pair-wise counterpart, when conditioning on a fixed tag SNP number. (ii) It saves genotyping costs substantially when conditioning on fixed genetic coverage (e.g.
  • 34.1% saving in HapMap CEU at 90% coverage). (iii) Tag SNPs identified using multiple-marker LD have good portability across closely related ethnic groups and (iv) show higher statistical power in association tests than those selected using conventional methods.
  • [MeSH-major] Algorithms. Chromosome Mapping / methods. Expressed Sequence Tags. Genetic Markers / genetics. Linkage Disequilibrium / genetics. Polymorphism, Single Nucleotide / genetics. Sequence Analysis, DNA / methods

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  • (PMID = 18006555.001).
  • [ISSN] 1367-4811
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Genetic Markers
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36. Service S, International Collaborative Group on Isolated Populations, Sabatti C, Freimer N: Tag SNPs chosen from HapMap perform well in several population isolates. Genet Epidemiol; 2007 Apr;31(3):189-94
Coriell Cell Repositories. culture/stock collections - Coriell Cell Repositories .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag SNPs chosen from HapMap perform well in several population isolates.
  • This utility, however, largely depends on the transferability of tag SNPs chosen from reference samples, such as HapMap, to samples from such populations.
  • In this report, we show that tag SNPs chosen from HapMap perform well in several population isolates; this is true even for populations that differ substantially from the HapMap sample either in levels of linkage disequilibrium or in SNP allele frequency distributions.

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  • (PMID = 17323370.001).
  • [ISSN] 0741-0395
  • [Journal-full-title] Genetic epidemiology
  • [ISO-abbreviation] Genet. Epidemiol.
  • [Language] eng
  • [Grant] United States / NIMH NIH HHS / MH / MH001375; United States / NIMH NIH HHS / MH / MH049499; United States / NINDS NIH HHS / NS / NS037484; United States / NINDS NIH HHS / NS / NS040024
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
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37. Milani L, Syvänen AC: Genotyping single nucleotide polymorphisms by multiplex minisequencing using tag-arrays. Methods Mol Biol; 2009;529:215-29
Hazardous Substances Data Bank. NATURAL RUBBER .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Genotyping single nucleotide polymorphisms by multiplex minisequencing using tag-arrays.
  • We present here a flexible system that combines highly specific genotyping by minisequencing single-base extension with the advantages of a microarray format that allows highly multiplexed and parallel analysis of any custom selected SNPs.Cyclic minisequencing reactions with fluorescently labeled dideoxynucleotides (ddNTPs) are performed in solution using multiplex PCR product as template and detection primers, designed to anneal immediately adjacent and upstream of the SNP site.
  • The detection primers carry unique Tag-sequences at their 5' ends and oligonucleotides complementary to the Tag-sequence, cTags, are immobilized on a microarray.

  • Hazardous Substances Data Bank. Silicon, Elemental .
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  • (PMID = 19381977.001).
  • [ISSN] 1064-3745
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Oligonucleotides; 9006-04-6 / Rubber; Z4152N8IUI / Silicon
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38. Lovmar L, Syvänen AC: Genotyping single-nucleotide polymorphisms by minisequencing using tag arrays. Methods Mol Med; 2005;114:79-92

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Genotyping single-nucleotide polymorphisms by minisequencing using tag arrays.
  • Our system, presented here, combines the highly specific genotyping principle of minisequencing with the advantages of a microarray format that allows highly multiplexed and parallel analysis.
  • The detection primers carry unique 5' tag sequences and oligonucleotides complementary to the tag sequence, cTags, are immobilized on a microarray.

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  • (PMID = 16156098.001).
  • [ISSN] 1543-1894
  • [Journal-full-title] Methods in molecular medicine
  • [ISO-abbreviation] Methods Mol. Med.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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39. Xu ZW, Zhang T, Song CJ, Li Q, Zhuang R, Yang K, Yang AG, Jin BQ: Application of sandwich ELISA for detecting tag fusion proteins in high throughput. Appl Microbiol Biotechnol; 2008 Nov;81(1):183-9

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Application of sandwich ELISA for detecting tag fusion proteins in high throughput.
  • Based on a series of mAbs against four frequently used tags--the human Ig Fc fragment, GST, maltose-binding protein, and thioredoxin--we developed corresponding sandwich enzyme-linked immunosorbent assay (ELISA) to detect these tag fusion proteins.
  • As a supplement for Western blot, the successfully established ELISA was specific, sensitive, quantitative, easy to perform, time-saving, and last but not least, suitable for high-throughput screening of tag fusion proteins.
  • Determination of soluble tag fusion proteins expressed by various systems with the sandwich ELISA developed in the present study could be a valuable and promising tool for the wide application of tag-protein fusion systems in the rapidly growing field of proteomics research.

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  • (PMID = 18818915.001).
  • [ISSN] 1432-0614
  • [Journal-full-title] Applied microbiology and biotechnology
  • [ISO-abbreviation] Appl. Microbiol. Biotechnol.
  • [Language] eng
  • [Publication-type] Evaluation Studies; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] Germany
  • [Chemical-registry-number] 0 / Antibodies, Monoclonal; 0 / Recombinant Fusion Proteins
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40. Fuchs SM, Raines RT: Polyarginine as a multifunctional fusion tag. Protein Sci; 2005 Jun;14(6):1538-44
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Polyarginine as a multifunctional fusion tag.
  • Here, we provide a thorough analysis of the effect of an R(9) tag on the attributes of a model protein: bovine pancreatic ribonuclease (RNase A).
  • The R(9) tag diminishes the conformational stability of RNase A (DeltaT(m)=-8 degrees C in phosphate-buffered saline).
  • The tag does not compromise the enzymatic activity of RNase A.
  • An R(9) tag facilitates the purification of RNase A by cation-exchange chromatography and enables the adsorption of RNase A on glass slides and silica resin with the retention of enzymatic activity.
  • The tag can be removed precisely and completely by treatment with carboxypeptidase B.
  • Finally, the R(9) tag increases both the cellular uptake of RNase A and the cytotoxicity of G88R RNase A, a variant that evades the cytosolic ribonuclease inhibitor protein.
  • Thus, we conclude that polyarginine is a versatile protein fusion tag.

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  • (PMID = 15930002.001).
  • [ISSN] 0961-8368
  • [Journal-full-title] Protein science : a publication of the Protein Society
  • [ISO-abbreviation] Protein Sci.
  • [Language] ENG
  • [Grant] United States / NIGMS NIH HHS / GM / R01 GM044783; United States / NIGMS NIH HHS / GM / GM44783; United States / NCI NIH HHS / CA / R01 CA073808; United States / NCI NIH HHS / CA / CA73808; United States / PHS HHS / / 08349
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Peptides; 0 / Recombinant Fusion Proteins; 25212-18-4 / polyarginine; EC 3.1.27.5 / Ribonuclease, Pancreatic
  • [Other-IDs] NLM/ PMC2253384
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41. Smits SH, Mueller A, Grieshaber MK, Schmitt L: Coenzyme- and His-tag-induced crystallization of octopine dehydrogenase. Acta Crystallogr Sect F Struct Biol Cryst Commun; 2008 Sep 1;64(Pt 9):836-9
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Coenzyme- and His-tag-induced crystallization of octopine dehydrogenase.
  • Over the last decade, protein purification has become more efficient and standardized through the introduction of affinity tags.
  • The choice and position of the tag, however, can directly influence the process of protein crystallization.
  • Octopine dehydrogenase (OcDH) without a His tag and tagged protein constructs such as OcDH-His(5) and OcDH-LEHis(6) have been investigated for their crystallizability.
  • As shown by the structure, the His(5) tag protrudes into the cleft between the NADH and L-arginine-binding domains and is mainly fixed in place by water molecules.
  • Together with NADH, the His(5) tag obviously locks the enzyme into a specific conformation which induces crystal growth.

  • Hazardous Substances Data Bank. (L)-HISTIDINE .
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  • (PMID = 18765918.001).
  • [ISSN] 1744-3091
  • [Journal-full-title] Acta crystallographica. Section F, Structural biology and crystallization communications
  • [ISO-abbreviation] Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Coenzymes; 0 / Recombinant Proteins; 4QD397987E / Histidine; EC 1.4.- / Amino Acid Oxidoreductases; EC 1.5.1.11 / D-octopine dehydrogenase
  • [Other-IDs] NLM/ PMC2531259
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42. Huang J, Qian Z, Huang X, Metaxas D, Axel L: Tag separation in cardiac tagged MRI. Med Image Comput Comput Assist Interv; 2008;11(Pt 2):289-97
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag separation in cardiac tagged MRI.
  • In this paper we introduce a tag separation method for better cardiac boundary segmentation and tag tracking.
  • 1) the tag patterns have a regular texture;.
  • 2) the cardiac images without tag patterns are piecewise smooth with sparse gradients.
  • These observations motivate us to use two dictionaries, one based on the Discrete Cosine Transform for representing tag patterns and the other based on the Wavelet Transform for representing the underlying cardiac image without tag patterns.
  • The two dictionaries are built such that they can lead to sparse representations of the tag patterns and of the piece-wise smooth regions without tag patterns.
  • With the two dictionaries, a new tag separation approach is proposed to simultaneously optimize w.r.t. the two sparse representations, where optimization is directed by the Total Variation regularization scheme.
  • While previous methods have focused on tag removal, our approach to acquiring both optimally-decomposed tag-only image and the cardiac image without tags simultaneously can be used for better tag tracking and cardiac boundary segmentation.

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  • (PMID = 18982617.001).
  • [Journal-full-title] Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention
  • [ISO-abbreviation] Med Image Comput Comput Assist Interv
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] Germany
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43. McLean GR, Cho CW, Trotter B, Schrader JW: RIVETS: the recombinant immunoglobulin and viral epitope tag system. J Immunol Methods; 2006 Aug 31;315(1-2):208-13
Immune Epitope Database and Analysis Resource. gene/protein/disease-specific - Related Immune Epitope Information .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] RIVETS: the recombinant immunoglobulin and viral epitope tag system.
  • The human monoclonal antibody 8F9 binds to a linear 10 amino acid epitope that is present within the N-terminal region of the gB envelope glycoprotein of HCMV.
  • Here we show that this short sequence (ETIYNTTLKY) can function as a tag for the detection of recombinant proteins using antibody 8F9.
  • The AD-2S1 tag was recognized by 8F9 whether present at the N- or C-terminus of recombinant proteins and tagged recombinant proteins could be quantified with multiple analytical techniques such as ELISA, western blotting, immunofluorescence and flow cytometry.
  • Production of 8F9 using different constant regions or constant regions from different species enhances the convenience and range of use of this system which we term the Recombinant Immunoglobulin and Viral Epitope Tag System or RIVETS.

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  • (PMID = 16919678.001).
  • [ISSN] 0022-1759
  • [Journal-full-title] Journal of immunological methods
  • [ISO-abbreviation] J. Immunol. Methods
  • [Language] eng
  • [Publication-type] Comparative Study; Evaluation Studies; Journal Article
  • [Publication-country] Netherlands
  • [Chemical-registry-number] 0 / Antibodies, Monoclonal; 0 / Antigens, Viral; 0 / Epitopes; 0 / Immunoglobulin G; 0 / Recombinant Proteins; 0 / Viral Envelope Proteins; 0 / human cytomegalovirus antigen p55-52
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44. Harfmann RG, Julka S, Cortes HJ: Instability of hexane-acetonitrile mobile phases used for the chromatographic analysis of triacylglycerides. J Sep Sci; 2008 Apr;31(6-7):915-20
Hazardous Substances Data Bank. ACETONITRILE .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Instability of hexane-acetonitrile mobile phases used for the chromatographic analysis of triacylglycerides.
  • The technique has been applied for the separation of numerous complex mixtures including triacylglycerides (TAG).
  • Determination of TAG in food products such as rice, palm, and canola oils have been previously described and the technique of choice utilizes a silver-modified silica column with hexane-ACN as the mobile phase.
  • Repeated retention time inconsistencies were experienced in our studies when this mobile phase was applied to the separation of natural and synthetic mixtures containing TAG.
  • The data obtained suggest that unless evaporative loss of the mobile phase is prevented, TAG retention time irreproducibility can be significant when using mobile-phase mixtures prepared with ACN or PCN.

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  • (PMID = 18381698.001).
  • [ISSN] 1615-9314
  • [Journal-full-title] Journal of separation science
  • [ISO-abbreviation] J Sep Sci
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] Germany
  • [Chemical-registry-number] 0 / Acetonitriles; 0 / Hexanes; 0 / Triglycerides; 2DDG612ED8 / n-hexane; Z072SB282N / acetonitrile
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45. Ferstl P, Gillig S, Kaufmann C, Dürr C, Eder C, Wierschem A, Russ W: Pressure-induced phase transitions in triacylglycerides. Ann N Y Acad Sci; 2010 Feb;1189:62-7
Hazardous Substances Data Bank. TRIOLEIN .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Pressure-induced phase transitions in triacylglycerides.
  • The melting point of triacylglycerides (TAGs) under atmospheric pressure depends on both the fatty acid composition and crystalline structure of the polymorphic state, which are influenced by the temperature treatment history of the TAG.
  • The investigated TAGs showed a significant nonlinear increase of the melting point with pressure.

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  • (PMID = 20233369.001).
  • [ISSN] 1749-6632
  • [Journal-full-title] Annals of the New York Academy of Sciences
  • [ISO-abbreviation] Ann. N. Y. Acad. Sci.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Fatty Acids; 0 / Triglycerides; 122-32-7 / Triolein; 7FP2Z3RVUV / trilaurin
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46. Sham PC, Ao SI, Kwan JS, Kao P, Cheung F, Fong PY, Ng MK: Combining functional and linkage disequilibrium information in the selection of tag SNPs. Bioinformatics; 2007 Jan 1;23(1):129-31
NCI CPTC Antibody Characterization Program. NCI CPTC Antibody Characterization Program .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Combining functional and linkage disequilibrium information in the selection of tag SNPs.
  • We have developed an online program, WCLUSTAG, for tag SNP selection that allows the user to specify variable tagging thresholds for different SNPs.
  • Tag SNPs are selected such that a SNP with user-specified tagging threshold C will have a minimum R2 of C with at least one tag SNP.

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  • (PMID = 17060359.001).
  • [ISSN] 1367-4811
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Grant] United States / NEI NIH HHS / EY / EY-12562
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Genetic Markers
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47. Măndoiu II, Trincă D: Exact and approximation algorithms for DNA tag set design. J Comput Biol; 2006 Apr;13(3):732-44
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Exact and approximation algorithms for DNA tag set design.
  • In this paper, we propose new solution methods for designing tag sets for use in universal DNA arrays.
  • First, we give integer linear programming formulations for two previous formalizations of the tag set design problem.
  • Second, we note the benefits of periodic tags and establish an interesting connection between the tag design problem and the problem of packing the maximum number of vertex-disjoint directed cycles in a given graph.
  • We show that combining a simple greedy cycle packing algorithm with a previously proposed alphabetic tree search strategy yields an increase of over 40% in the number of tags compared to previous methods.

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  • (PMID = 16706722.001).
  • [ISSN] 1066-5277
  • [Journal-full-title] Journal of computational biology : a journal of computational molecular cell biology
  • [ISO-abbreviation] J. Comput. Biol.
  • [Language] eng
  • [Publication-type] Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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48. Lin HL, Ho HO, Chen CC, Yeh TS, Sheu MT: Process and formulation characterizations of the thermal adhesion granulation (TAG) process for improving granular properties. Int J Pharm; 2008 Jun 5;357(1-2):206-12
NCI CPTAC Assay Portal. NCI CPTAC Assay Portal .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Process and formulation characterizations of the thermal adhesion granulation (TAG) process for improving granular properties.
  • In this study, we demonstrate the feasibility of using the thermal adhesion granulation (TAG) method to improve granular properties for preparing highly compressible excipients as direct tabletting aids.
  • The TAG method subjects a mixture containing excipients, such as microcrystalline cellulose (MCC), lactose, starch, or dibasic calcium phosphate (DCP), under closed conditions with a low moisture content and low content of polyvinyl pyrrolidone (PVP) as a binder, to heating during mixing by tumble rotation to produce highly compressible granules.
  • Results demonstrated that a closed system is more efficient than an open system at such a low moisture content, and both water and ethanol were able to fulfill the role of a granulation liquid, but water was more appropriate than ethanol for successfully producing granules suitable for use as direct tabletting aids by the TAG method.
  • It was also found that a 5% moisture content in the powder mixture containing MCC and PVP is optimal in the TAG process to produce granules with the desired characteristics for pharmaceutical applications.
  • It was further demonstrated that the TAG process is able to imbue these commonly used diluents with more-desirable physical characteristics of granules for direct tabletting, enabling the processing of these commonly used diluents with 50% PVP into directly compressible matrix materials.
  • [MeSH-minor] Adhesiveness. Cellulose. Chemistry, Physical. Excipients. Hot Temperature. Humidity. Particle Size. Physicochemical Phenomena. Povidone. Solubility. Solvents. Tensile Strength

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  • (PMID = 18353570.001).
  • [ISSN] 0378-5173
  • [Journal-full-title] International journal of pharmaceutics
  • [ISO-abbreviation] Int J Pharm
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] Netherlands
  • [Chemical-registry-number] 0 / Excipients; 0 / Powders; 0 / Solvents; 0 / microcrystalline cellulose; 9003-39-8 / Povidone; 9004-34-6 / Cellulose
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49. Chen J, Rattray M: Analysis of tag-position bias in MPSS technology. BMC Genomics; 2006;7:77
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Analysis of tag-position bias in MPSS technology.
  • It has previously been observed that the position of the signature tag in a transcript (distance from 3' end) can affect the measurement, but this effect has not been studied in detail.
  • RESULTS: We quantify the effect of tag-position bias in Classic and Signature MPSS technology using published data from Arabidopsis, rice and human.
  • We investigate the relationship between measured concentration and tag-position using nonlinear regression methods.
  • For Classic MPSS data, genes with tag-position in the middle-range have highest measured abundance on average while genes with tag-position in the high-range, far from the 3' end, show a significant decrease.
  • For Signature MPSS data, high-range tag-position genes tend to have a flatter relationship between tag-position and measured abundance.
  • For both Classic and Signature MPSS data there is a positive correlation between measured abundance and tag-position for low-range tag-position genes.
  • Compared with the effects of mRNA length and number of exons, tag-position bias seems to be more significant in Arabadopsis.
  • The tag-position bias is reflected both in the measured abundance of genes with a significant tag count and in the proportion of unexpressed genes identified.
  • CONCLUSION: Tag-position bias should be taken into consideration when measuring mRNA transcript abundance using MPSS technology, both in Classic and Signature MPSS methods.

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  • (PMID = 16603069.001).
  • [ISSN] 1471-2164
  • [Journal-full-title] BMC genomics
  • [ISO-abbreviation] BMC Genomics
  • [Language] eng
  • [Publication-type] Comparative Study; Evaluation Studies; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / RNA, Messenger
  • [Other-IDs] NLM/ PMC1533822
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50. Arnau J, Lauritzen C, Petersen GE, Pedersen J: Current strategies for the use of affinity tags and tag removal for the purification of recombinant proteins. Protein Expr Purif; 2006 Jul;48(1):1-13
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Current strategies for the use of affinity tags and tag removal for the purification of recombinant proteins.
  • Affinity tags are highly efficient tools for protein purification.
  • The use of affinity tags has therefore become widespread in several areas of research e.g., high throughput expression studies aimed at finding a biological function to large numbers of yet uncharacterized proteins.
  • In some cases, the presence of the affinity tag in the recombinant protein is unwanted or may represent a disadvantage for the projected application of the protein, like for clinical use.
  • Therefore, an increasing number of approaches are available at present that are designed for the removal of the affinity tag from the recombinant protein.
  • These process enzymes can subsequently be removed from the process by affinity purification, since they also include a tag.
  • Here, a survey of the most common affinity tags and the current methods for tag removal is presented, with special emphasis on the removal of N-terminal histidine tags using TAGZyme, a system based on exopeptidase cleavage.
  • In the quest to reduce the significant costs associated with protein purification at large scale, relevant aspects involved in the development of downstream processes for pharmaceutical protein production that incorporate a tag removal step are also discussed.
  • A comparison of the yield of standard vs. affinity purification together with an example of tag removal using TAGZyme is also included.

  • Hazardous Substances Data Bank. (L)-HISTIDINE .
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  • (PMID = 16427311.001).
  • [ISSN] 1046-5928
  • [Journal-full-title] Protein expression and purification
  • [ISO-abbreviation] Protein Expr. Purif.
  • [Language] eng
  • [Publication-type] Comparative Study; Journal Article; Review
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Affinity Labels; 0 / Indicators and Reagents; 0 / Recombinant Fusion Proteins; 4QD397987E / Histidine; EC 3.4.- / Exopeptidases
  • [Number-of-references] 115
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51. Xu Z, Kaplan NL, Taylor JA: TAGster: efficient selection of LD tag SNPs in single or multiple populations. Bioinformatics; 2007 Dec 1;23(23):3254-5
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] TAGster: efficient selection of LD tag SNPs in single or multiple populations.
  • Genetic association studies increasingly rely on the use of linkage disequilibrium (LD) tag SNPs to reduce genotyping costs.
  • We developed a software package TAGster to select, evaluate and visualize LD tag SNPs both for single and multiple populations.
  • We implement several strategies to improve the efficiency of current LD tag SNP selection algorithms:.
  • (1) we modify the tag SNP selection procedure of Carlson et al. to improve selection efficiency and further generalize it to multiple populations. (2) We propose a redundant SNP elimination step to speed up the exhaustive tag SNP search algorithm proposed by Qin et al. (3) We present an additional multiple population tag SNP selection algorithm based on the framework of Howie et al., but using our modified exhaustive search procedure.
  • [MeSH-major] Chromosome Mapping / methods. Expressed Sequence Tags. Genetic Markers / genetics. Genetics, Population. Linkage Disequilibrium / genetics. Polymorphism, Single Nucleotide / genetics. Sequence Analysis, DNA / methods

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  • [Cites] Am J Hum Genet. 2004 Jan;74(1):106-20 [14681826.001]
  • [Cites] Biometrics. 1979 Mar;35(1):235-54 [497335.001]
  • [Cites] Eur J Hum Genet. 2007 Oct;15(10):1063-70 [17568388.001]
  • [Cites] Bioinformatics. 2006 Jan 15;22(2):220-5 [16269414.001]
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  • [Cites] Nature. 2005 Oct 27;437(7063):1299-320 [16255080.001]
  • (PMID = 17827206.001).
  • [ISSN] 1367-4811
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Grant] United States / Intramural NIH HHS / / Z01 ES049033-11; United States / Intramural NIH HHS / / Z99 ES999999
  • [Publication-type] Journal Article; Research Support, N.I.H., Intramural
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Genetic Markers
  • [Other-IDs] NLM/ NIHMS87942; NLM/ PMC2782964
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52. Erdem E, Zeng H, Zhou J, Shi J, Wells DL: Investigation of RFID tag readability for pharmaceutical products at item level. Drug Dev Ind Pharm; 2009 Nov;35(11):1312-24
MedlinePlus Health Information. consumer health - Medicines.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Investigation of RFID tag readability for pharmaceutical products at item level.
  • There is a pressing need to analyze the performance of RFID tags attached to various pharmaceutical dosage forms.
  • Factors considered include dosage forms, ion concentration in solution, angle of rotation, and distance between the RFID tag and the interrogator.
  • RESULTS: Compared with empty container, the filling of any representative dosage forms causes deteriorated readability for the tag attached to container.
  • In addition, an increase in distance (equivalent to higher RF attenuation level) and higher ion concentration in solution beyond a certain level have detrimental effect on tag readability.
  • CONCLUSION: The analysis shows that the RFID tag readability is strongly dependent on the factors that are experimented with.

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  • (PMID = 19832631.001).
  • [ISSN] 1520-5762
  • [Journal-full-title] Drug development and industrial pharmacy
  • [ISO-abbreviation] Drug Dev Ind Pharm
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Dosage Forms; 0 / Pharmaceutical Preparations
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53. Halperin E, Kimmel G, Shamir R: Tag SNP selection in genotype data for maximizing SNP prediction accuracy. Bioinformatics; 2005 Jun;21 Suppl 1:i195-203
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag SNP selection in genotype data for maximizing SNP prediction accuracy.
  • MOTIVATION: The search for genetic regions associated with complex diseases, such as cancer or Alzheimer's disease, is an important challenge that may lead to better diagnosis and treatment.
  • Therefore, it is essential to find a small subset of informative SNPs (tag SNPs) that may be used as good representatives of the rest of the SNPs.
  • RESULTS: We define a new natural measure for evaluating the prediction accuracy of a set of tag SNPs, and use it to develop a new method for tag SNPs selection.
  • Our method is based on a novel algorithm that predicts the values of the rest of the SNPs given the tag SNPs.
  • In contrast to most previous methods, our prediction algorithm uses the genotype information and not the haplotype information of the tag SNPs.
  • We compared our method with two state-of-the-art tag SNP selection algorithms on 58 different genotype datasets from four different sources.
  • Our method consistently found tag SNPs with considerably better prediction ability than the other methods.

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  • (PMID = 15961458.001).
  • [ISSN] 1367-4803
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 9007-49-2 / DNA
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54. Huang YT, Zhang K, Chen T, Chao KM: Selecting additional tag SNPs for tolerating missing data in genotyping. BMC Bioinformatics; 2005;6:263
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Selecting additional tag SNPs for tolerating missing data in genotyping.
  • BACKGROUND: Recent studies have shown that the patterns of linkage disequilibrium observed in human populations have a block-like structure, and a small subset of SNPs (called tag SNPs) is sufficient to distinguish each pair of haplotype patterns in the block.
  • In reality, some tag SNPs may be missing, and we may fail to distinguish two distinct haplotypes due to the ambiguity caused by missing data.
  • RESULTS: We show there exists a subset of SNPs (referred to as robust tag SNPs) which can still distinguish all distinct haplotypes even when some SNPs are missing.
  • The problem of finding minimum robust tag SNPs is shown to be NP-hard.
  • To find robust tag SNPs efficiently, we propose two greedy algorithms and one linear programming relaxation algorithm.
  • (2) the genotyping cost saved by using tag SNPs can be as high as 80%; and (3) genotyping additional tag SNPs for tolerating missing data is still cost-effective.
  • CONCLUSION: Genotyping robust tag SNPs is more practical than just genotyping the minimum tag SNPs if we can not avoid the occurrence of missing data.

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  • (PMID = 16259642.001).
  • [ISSN] 1471-2105
  • [Journal-full-title] BMC bioinformatics
  • [ISO-abbreviation] BMC Bioinformatics
  • [Language] eng
  • [Grant] United States / NHGRI NIH HHS / HG / P50 HG002790
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Genetic Markers
  • [Other-IDs] NLM/ PMC1316880
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55. Cho JS, Haider SE, Makaroun MS: Endovascular therapy of thoracic aneurysms: Gore TAG trial results. Semin Vasc Surg; 2006 Mar;19(1):18-24
Hazardous Substances Data Bank. TEFLON .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Endovascular therapy of thoracic aneurysms: Gore TAG trial results.
  • Gore TAG endoprosthesis was the first to enter clinical trials in the United States for treatment of descending thoracic aortic aneurysm, and gained the approval of the US Food and Drug Administration for general use in March 2005.
  • Through clinical trials, the safety and efficacy of the Gore TAG endoprosthesis were proven and shown to be superior to those of open surgical repair.

  • MedlinePlus Health Information. consumer health - After Surgery.
  • MedlinePlus Health Information. consumer health - Stroke.
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  • (PMID = 16533688.001).
  • [ISSN] 0895-7967
  • [Journal-full-title] Seminars in vascular surgery
  • [ISO-abbreviation] Semin Vasc Surg
  • [Language] eng
  • [Publication-type] Journal Article; Review
  • [Publication-country] United States
  • [Chemical-registry-number] 9002-84-0 / Polytetrafluoroethylene
  • [Number-of-references] 11
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56. Lemaire R, Stauber J, Wisztorski M, Van Camp C, Desmons A, Deschamps M, Proess G, Rudlof I, Woods AS, Day R, Salzet M, Fournier I: Tag-mass: specific molecular imaging of transcriptome and proteome by mass spectrometry based on photocleavable tag. J Proteome Res; 2007 Jun;6(6):2057-67
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag-mass: specific molecular imaging of transcriptome and proteome by mass spectrometry based on photocleavable tag.
  • We have now developed specific targeting probes (oligonucleotides, antibodies), named Tag-Mass.
  • This approach is based on probes modified with a photocleavable linker coupled with a tag cleaved and detected using mass spectrometry.
  • Tag-Mass development is the key for a rapid, sensitive, and accurate approach to correlate levels of expression of different mRNA or proteins in diseases.

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  • (PMID = 17477556.001).
  • [ISSN] 1535-3893
  • [Journal-full-title] Journal of proteome research
  • [ISO-abbreviation] J. Proteome Res.
  • [Language] eng
  • [Grant] United States / Intramural NIH HHS / / Z99 DA999999
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Antibodies; 0 / Molecular Probes; 0 / Oligonucleotide Probes; 0 / Proteins; 0 / Proteome; 0 / RNA, Messenger
  • [Other-IDs] NLM/ NIHMS236773; NLM/ PMC2947822
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57. Charalambous CP, Mills SP, Hayton MJ: The tag test for Dupuytren's surgery. Hand (N Y); 2009 Sep;4(3):270-1

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] The tag test for Dupuytren's surgery.
  • We describe a simple test, the Tag test, that can be used intra-operatively to help identification of the digital nerves.

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  • (PMID = 19291331.001).
  • [ISSN] 1558-9447
  • [Journal-full-title] Hand (New York, N.Y.)
  • [ISO-abbreviation] Hand (N Y)
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
  • [Other-IDs] NLM/ PMC2724610
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58. Jaipuri FA, Pohl NL: Toward solution-phase automated iterative synthesis: fluorous-tag assisted solution-phase synthesis of linear and branched mannose oligomers. Org Biomol Chem; 2008 Aug 7;6(15):2686-91
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Toward solution-phase automated iterative synthesis: fluorous-tag assisted solution-phase synthesis of linear and branched mannose oligomers.
  • We report herein the first synthesis of linear and branched mannose oligosaccharides using fluorous-tag assistance with reagents and FSPE protocols that are amenable to automation.

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  • (PMID = 18633525.001).
  • [ISSN] 1477-0520
  • [Journal-full-title] Organic & biomolecular chemistry
  • [ISO-abbreviation] Org. Biomol. Chem.
  • [Language] eng
  • [Grant] United States / NIGMS NIH HHS / GM / 1 R41 GM 075436-01
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Cross-Linking Reagents; 0 / Hydrocarbons, Fluorinated; 0 / Oligosaccharides; 0 / Solutions; PHA4727WTP / Mannose
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59. Wheatley GH 3rd, Gurbuz AT, Rodriguez-Lopez JA, Ramaiah VG, Olsen D, Williams J, Diethrich EB: Midterm outcome in 158 consecutive Gore TAG thoracic endoprostheses: single center experience. Ann Thorac Surg; 2006 May;81(5):1570-7; discussion 1577

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Midterm outcome in 158 consecutive Gore TAG thoracic endoprostheses: single center experience.
  • We reviewed our consecutive clinical experience with the Gore TAG endoprosthesis (W. L.
  • METHODS: After obtaining institutional review board approval, 158 high surgical risk patients underwent attempted delivery of a Gore TAG thoracic endoprosthesis between February 2000 and July 2004.
  • CONCLUSIONS: Endoluminal grafting of multiple types of descending thoracic aorta pathologies with the Gore TAG thoracic endoprosthesis is feasible and safe in higher surgical risk patients.

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  • (PMID = 16631636.001).
  • [ISSN] 1552-6259
  • [Journal-full-title] The Annals of thoracic surgery
  • [ISO-abbreviation] Ann. Thorac. Surg.
  • [Language] eng
  • [Publication-type] Clinical Trial; Journal Article
  • [Publication-country] Netherlands
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60. Schmieder R, Lim YW, Rohwer F, Edwards R: TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets. BMC Bioinformatics; 2010;11:341

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.
  • BACKGROUND: Sequencing metagenomes that were pre-amplified with primer-based methods requires the removal of the additional tag sequences from the datasets.
  • Furthermore, the tag sequence may be unavailable or incorrectly reported.
  • RESULTS: TagCleaner is a web application developed to automatically identify and remove known or unknown tag sequences allowing insertions and deletions in the dataset.
  • CONCLUSIONS: TagCleaner is a publicly available web application that is able to automatically detect and efficiently remove tag sequences from metagenomic datasets.

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  • (PMID = 20573248.001).
  • [ISSN] 1471-2105
  • [Journal-full-title] BMC bioinformatics
  • [ISO-abbreviation] BMC Bioinformatics
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / DNA Primers
  • [Other-IDs] NLM/ PMC2910026
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61. Tanimoto J: Does a tag system effectively support emerging cooperation? J Theor Biol; 2007 Aug 21;247(4):756-64
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Does a tag system effectively support emerging cooperation?
  • This paper investigates whether the so-called Tag Systems support emerging cooperation with respect to 2x2 games.
  • The Tag System, initially proposed by Riolo et al. [2001.
  • Nature 414, 441-443], gives each agent both a Tag and Tol defined by [0,1] real numbers.
  • Both Tag and Tol are assumed to be evolving.
  • Results show that the tag's effectiveness depends on whether the AllD strategy is allowed in the system.
  • Thus, (1) the tag's effectiveness is more meager than that reported by Riolo et al., (2) the Tag System can use alternating reciprocity more effectively than the analytic solution in a Hero game;.
  • (3) a system using a 2D tag space supports cooperation more effectively than the usual Tag System.

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  • (PMID = 17507033.001).
  • [ISSN] 0022-5193
  • [Journal-full-title] Journal of theoretical biology
  • [ISO-abbreviation] J. Theor. Biol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] Netherlands
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62. Morales-Sanfrutos J, Lopez-Jaramillo FJ, Hernandez-Mateo F, Santoyo-Gonzalez F: Vinyl sulfone bifunctional tag reagents for single-point modification of proteins. J Org Chem; 2010 Jun 18;75(12):4039-47
Hazardous Substances Data Bank. VINYL SULFONE .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Vinyl sulfone bifunctional tag reagents for single-point modification of proteins.
  • We report herein the synthesis of vinyl sulfone derivatized bifunctional tag single-attachment-point reagents (BTSAP) bearing biotin and a fluorescent tag and their applications in proteins for the introduction of multiple labels by means of the Michael-type addition of the electrophilic vinyl sulfone group.
  • These BTSAP reagents were easily synthesized by a two-step chemical strategy involving the preparation of alkyne vinyl sulfone derivatized tags (AVST) and subsequent click CuAAC attachment of a second azide functionalized tag.
  • This approach yields equivalent results in terms of fluorescent labeling, specific activity, and functionality of the biotin tag when compared with the direct bifunctional labeling by the BTSAP reagent.

  • Hazardous Substances Data Bank. BIOTIN .
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  • (PMID = 20496947.001).
  • [ISSN] 1520-6904
  • [Journal-full-title] The Journal of organic chemistry
  • [ISO-abbreviation] J. Org. Chem.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Cross-Linking Reagents; 0 / Fluorescent Dyes; 0 / Proteins; 0 / Sulfones; 5PFN71LP8M / divinyl sulfone; 6SO6U10H04 / Biotin
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63. Gill D, Griffin A: Good Medical Practice: what are we trying to say? Textual analysis using tag clouds. Med Educ; 2010 Mar;44(3):316-22

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Good Medical Practice: what are we trying to say? Textual analysis using tag clouds.
  • METHODS: Tag clouds are a feature of the latest applications of the World Wide Web, commonly known as Web 2.0.
  • Tag cloud-generating software was used to produce tag clouds of four texts illustrating GMC guidance produced between 1963 and 2006 to aid textual analysis and to determine whether this methodology could pick up this change in tenor.
  • Tag clouds provide an interesting and innovative way of analysing text and revealing obscured discourses, and their potential in education and research is worthy of further exploration.

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  • (PMID = 20444063.001).
  • [ISSN] 1365-2923
  • [Journal-full-title] Medical education
  • [ISO-abbreviation] Med Educ
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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64. Patel JD, O'Carra R, Jones J, Woodward JG, Mumper RJ: Preparation and characterization of nickel nanoparticles for binding to his-tag proteins and antigens. Pharm Res; 2007 Feb;24(2):343-52
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Preparation and characterization of nickel nanoparticles for binding to his-tag proteins and antigens.
  • PURPOSE: The purpose of these studies was to prepare nanoparticles (NPs) with a small amount of surface-chelated nickel for obtaining enhanced binding of histidine-tagged (his-tag) proteins compared to non-histidine-tagged protein binding to charged nanoparticles.
  • The Ni-NPs were investigated for binding to two his-tag proteins, green fluorescent protein (GFP) and his-tag HIV-1 Gag p24.
  • In vivo studies in mice were carried out to evaluate the immune responses obtained to his-tag Gag p24 bound to Ni-NPs.
  • The optimal binding ratio his-tag GFP and his-tag Gag p24 to Ni-NPs was found to be 1:33.7 and 1:35.4 w/w, respectively.
  • This interaction was stable at 37 degrees C in PBS, pH 7.4 over 4 h and the interaction of his-tag GFP with the Ni-NPs was enhanced compared to control NPs prepared with no Ni on the surface (NTA-NPs).
  • The in vivo studies demonstrated enhanced serum IgG and IgG2a responses to his-tag Gag p24 bound to Ni-NPs compared to protein adjuvanted with Alum or adsorbed on the surface of control NTA-NPs.
  • CONCLUSIONS: Ni-NPs can be used to bind strongly to his-tag proteins.

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  • Hazardous Substances Data Bank. NICKEL, ELEMENTAL .
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  • (PMID = 17180725.001).
  • [ISSN] 0724-8741
  • [Journal-full-title] Pharmaceutical research
  • [ISO-abbreviation] Pharm. Res.
  • [Language] eng
  • [Grant] United States / NIAID NIH HHS / AI / AI058842
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Antigens; 0 / Emulsions; 0 / HIV Core Protein p24; 0 / Immunoglobulin G; 0 / Proteins; 0 / Waxes; 147336-22-9 / Green Fluorescent Proteins; 30IQX730WE / Polyethylene Glycols; 4QD397987E / Histidine; 7OV03QG267 / Nickel; 82115-62-6 / Interferon-gamma; 9005-00-9 / octadecyl polyoxyethylene ether
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65. Mathers DA, McCarthy SM, Cooke JE, Ghavanini AA, Puil E: Effects of the beta-amino acid antagonist TAG on thalamocortical inhibition. Neuropharmacology; 2009 Jun;56(8):1097-105
NCI CPTC Antibody Characterization Program. NCI CPTC Antibody Characterization Program .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Effects of the beta-amino acid antagonist TAG on thalamocortical inhibition.
  • Given their hypothesized roles, we investigated effects of the putative beta-amino acid antagonist 6-aminomethyl-3-methyl-4H-1,2,4-benzothiadiazine-1,1-dioxide (TAG) on synaptic inhibition in dorsal thalamus.
  • TAG antagonized mixed IPSCs (IC(50) approximately 70 microM) in a manner distinguishable from classical glycine and GABA(A) receptor antagonists.
  • TAG (250 microM) reduced the amplitude of glycinergic components which had a decay time constant of approximately 9 ms or approximately 230 ms by 45-50%, and a GABA(A)ergic component which had a decay time constant of approximately 40 ms by approximately 60%.
  • As in the glycinergic component, TAG reduced the amplitude of infrequently occurring, pure glycinergic IPSCs.
  • Surprisingly, TAG had no effect on pure GABA(A)ergic IPSCs, with a decay time constant of approximately 20 ms that correlated to kinetics of GABA-activated channels.
  • Overall, the effects of TAG implicate beta-amino acid involvement in GABA(A)ergic and glycinergic transmission.

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  • (PMID = 19332081.001).
  • [ISSN] 1873-7064
  • [Journal-full-title] Neuropharmacology
  • [ISO-abbreviation] Neuropharmacology
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Benzothiadiazines; 0 / Gabra4 protein, rat; 0 / Glra2 protein, rat; 0 / Protein Subunits; 0 / Receptors, GABA-A; 0 / Receptors, Glycine; 0 / glycine receptor alpha1; 11P2JDE17B / beta-Alanine; 1EQV5MLY3D / Taurine; 40709-69-1 / bicuculline methiodide; 80938-51-8 / 6-aminomethyl-3-methyl-4H-1,2,4-benzothiadiazine 1,1-dioxide; H030S2S85J / Kynurenic Acid; H9Y79VD43J / Strychnine; TE7660XO1C / Glycine; Y37615DVKC / Bicuculline
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66. Nicolas P, Sun F, Li LM: A model-based approach to selection of tag SNPs. BMC Bioinformatics; 2006;7:303
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] A model-based approach to selection of tag SNPs.
  • Effective genetic association studies require the identification of sets of tag SNPs that capture as much haplotype information as possible.
  • Tag SNP selection is analogous to the problem of data compression in information theory.
  • According to Shannon's framework, the optimal tag set maximizes the entropy of the tag SNPs subject to constraints on the number of SNPs.
  • It also provides a machinery for the prediction of tagged SNPs and thereby to assess the performances of tag sets through their ability to predict larger SNP sets.
  • RESULTS: Here, we compute the description code-lengths of SNP data for an array of models and we develop tag SNP selection methods based on these models and the strategy of entropy maximization.
  • Using data sets from the HapMap and ENCODE projects, we show that the hidden Markov model introduced by Li and Stephens outperforms the other models in several aspects: description code-length of SNP data, information content of tag sets, and prediction of tagged SNPs.
  • This is the first use of this model in the context of tag SNP selection.
  • CONCLUSION: Our study provides strong evidence that the tag sets selected by our best method, based on Li and Stephens model, outperform those chosen by several existing methods.
  • The results also suggest that information content evaluated with a good model is more sensitive for assessing the quality of a tagging set than the correct prediction rate of tagged SNPs.
  • Besides, we show that haplotype phase uncertainty has an almost negligible impact on the ability of good tag sets to predict tagged SNPs.
  • This justifies the selection of tag SNPs on the basis of haplotype informativeness, although genotyping studies do not directly assess haplotypes.

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  • (PMID = 16776821.001).
  • [ISSN] 1471-2105
  • [Journal-full-title] BMC bioinformatics
  • [ISO-abbreviation] BMC Bioinformatics
  • [Language] eng
  • [Grant] United States / NHGRI NIH HHS / HG / P50 HG002790
  • [Publication-type] Comparative Study; Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Genetic Markers
  • [Other-IDs] NLM/ PMC1525207
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67. He J, Westbrooks K, Zelikovsky A: Linear reduction method for predictive and informative tag SNP selection. Int J Bioinform Res Appl; 2005;1(3):249-60
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Linear reduction method for predictive and informative tag SNP selection.
  • Therefore, it is desirable to reduce the number of SNPs that should be sequenced to a small number of informative representatives called tag SNPs.
  • In this paper, we propose a new linear algebra-based method for selecting and using tag SNPs.
  • We measure the quality of our tag SNP selection algorithm by comparing actual SNPs with SNPs predicted from selected linearly independent tag SNPs.

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  • (PMID = 18048134.001).
  • [ISSN] 1744-5485
  • [Journal-full-title] International journal of bioinformatics research and applications
  • [ISO-abbreviation] Int J Bioinform Res Appl
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] Switzerland
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68. Futatsumori-Sugai M, Abe R, Watanabe M, Kudou M, Yamamoto T, Ejima D, Arakawa T, Tsumoto K: Utilization of Arg-elution method for FLAG-tag based chromatography. Protein Expr Purif; 2009 Oct;67(2):148-55
Hazardous Substances Data Bank. (L)-ARGININE .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Utilization of Arg-elution method for FLAG-tag based chromatography.
  • FLAG-tag is one of the commonly used purification technologies for recombinant proteins.
  • An antibody, M2, specifically binds to the FLAG-tag whether it is attached to N- or C-terminus of proteins to be purified.

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  • (PMID = 19362151.001).
  • [ISSN] 1096-0279
  • [Journal-full-title] Protein expression and purification
  • [ISO-abbreviation] Protein Expr. Purif.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / ATP-Binding Cassette Transporters; 0 / Bacterial Proteins; 0 / Insect Proteins; 0 / MsbA protein, Bacteria; 0 / Oligopeptides; 0 / Peptides; 0 / Recombinant Fusion Proteins; 94ZLA3W45F / Arginine; 98849-88-8 / FLAG peptide; EC 2.7.1.- / Mitogen-Activated Protein Kinase 10
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69. Hiatt JB, Patwardhan RP, Turner EH, Lee C, Shendure J: Parallel, tag-directed assembly of locally derived short sequence reads. Nat Methods; 2010 Feb;7(2):119-22
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Parallel, tag-directed assembly of locally derived short sequence reads.
  • A long DNA fragment library is converted to a population of nested sublibraries, and a tag sequence directs grouping of short reads derived from the same long fragment, enabling localized assembly of long fragment sequences.

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  • (PMID = 20081835.001).
  • [ISSN] 1548-7105
  • [Journal-full-title] Nature methods
  • [ISO-abbreviation] Nat. Methods
  • [Language] ENG
  • [Grant] United States / NIGMS NIH HHS / GM / GM007266-35; United States / NIGMS NIH HHS / GM / T32 GM007266; United States / NIGMS NIH HHS / GM / T32 GM007266-35; United States / NIGMS NIH HHS / GM / T32GM007266
  • [Publication-type] Evaluation Studies; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Other-IDs] NLM/ NIHMS185279; NLM/ PMC2848820
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70. Kendall WL, Conn PB, Hines JE: Combining multistate capture-recapture data with tag recoveries to estimate demographic parameters. Ecology; 2006 Jan;87(1):169-77

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Combining multistate capture-recapture data with tag recoveries to estimate demographic parameters.
  • At the same time, for many species, there are considerable tag recovery data provided by the public that could be modeled in order to increase precision and to extend inference to a greater number of areas or states.
  • Here we present a statistical model for combining multistate capture-recapture data (e.g., from a breeding ground study) with multistate tag recovery data (e.g., from wintering grounds).
  • Our analysis produced marginal improvement in precision, due to relatively few recoveries, but we demonstrate how precision could be further improved with increases in the probability that a retrieved tag is reported.

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  • (PMID = 16634308.001).
  • [ISSN] 0012-9658
  • [Journal-full-title] Ecology
  • [ISO-abbreviation] Ecology
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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71. Alcina A, Fernández O, Gonzalez JR, Catalá-Rabasa A, Fedetz M, Ndagire D, Leyva L, Guerrero M, Arnal C, Delgado C, Lucas M, Izquierdo G, Matesanz F: Tag-SNP analysis of the GFI1-EVI5-RPL5-FAM69 risk locus for multiple sclerosis. Eur J Hum Genet; 2010 Jul;18(7):827-31
MedlinePlus Health Information. consumer health - Multiple Sclerosis.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag-SNP analysis of the GFI1-EVI5-RPL5-FAM69 risk locus for multiple sclerosis.
  • In this study, we performed an analysis and fine mapping of this locus, genotyping eight Tag-SNPs in 732 MS patients and 974 controls from Spain.
  • We observed an association with MS in three of eight Tag-SNPs: rs11804321 (P=0.008, OR=1.29; 95% CI=1.08-1.54), rs11808092 (P=0.048, OR=1.19; 95% CI=1.03-1.39) and rs6680578 (P=0.0082, OR=1.23; 95% CI=1.07-1.41).
  • This Tag-SNP captures two SNPs in complete linkage disequilibrium (r(2)=1), both located within the 17th intron of the EVI5 gene.

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  • (PMID = 20087403.001).
  • [ISSN] 1476-5438
  • [Journal-full-title] European journal of human genetics : EJHG
  • [ISO-abbreviation] Eur. J. Hum. Genet.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / DNA-Binding Proteins; 0 / EVI5 protein, human; 0 / GFI1 protein, human; 0 / Nuclear Proteins; 0 / Ribosomal Proteins; 0 / Transcription Factors; 0 / ribosomal protein L5, human
  • [Other-IDs] NLM/ PMC2987353
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72. Stoeck T, Behnke A, Christen R, Amaral-Zettler L, Rodriguez-Mora MJ, Chistoserdov A, Orsi W, Edgcomb VP: Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities. BMC Biol; 2009;7:72

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities.
  • We applied a high-throughput parallel tag sequencing (454 sequencing) protocol adopted for eukaryotes to investigate protistan community complexity in two contrasting anoxic marine ecosystems (Framvaren Fjord, Norway; Cariaco deep-sea basin, Venezuela).
  • By comparing these clone library data with 454 amplicon library data, we assess the efficiency of high-throughput tag sequencing strategies.
  • We here present a novel, highly conservative bioinformatic analysis pipeline for the processing of large tag sequence data sets.
  • More than 90% of this diversity was represented by OTUs with less than 10 sequence tags.
  • The most important innovations in our newly developed bioinformatics pipeline employ (i) BLASTN with query parameters adjusted for highly variable domains and a complete database of public ribosomal RNA (rRNA) gene sequences for taxonomic assignments of tags;.
  • (ii) a clustering of tags at k differences (Levenshtein distance) with a newly developed algorithm enabling very fast OTU clustering for large tag sequence data sets; and (iii) a novel parsing procedure to combine the data from individual analyses.

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  • (PMID = 19886985.001).
  • [ISSN] 1741-7007
  • [Journal-full-title] BMC biology
  • [ISO-abbreviation] BMC Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] England
  • [Chemical-registry-number] 0 / DNA, Bacterial
  • [Other-IDs] NLM/ PMC2777867
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73. Verzijlbergen KF, Menendez-Benito V, van Welsem T, van Deventer SJ, Lindstrom DL, Ovaa H, Neefjes J, Gottschling DE, van Leeuwen F: Recombination-induced tag exchange to track old and new proteins. Proc Natl Acad Sci U S A; 2010 Jan 5;107(1):64-8
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Recombination-induced tag exchange to track old and new proteins.
  • Here we describe recombination-induced tag exchange (RITE), a genetic method that induces a permanent epitope-tag switch in the coding sequence after a hormone-induced activation of Cre recombinase.
  • The time-controlled tag switch provides a unique ability to detect and separate old and new proteins in time and space, which opens up opportunities to investigate the dynamic behavior of proteins.

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  • [Cites] Nat Cell Biol. 2001 Jun;3(6):E145-7 [11389456.001]
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  • (PMID = 20018668.001).
  • [ISSN] 1091-6490
  • [Journal-full-title] Proceedings of the National Academy of Sciences of the United States of America
  • [ISO-abbreviation] Proc. Natl. Acad. Sci. U.S.A.
  • [Language] eng
  • [Publication-type] Evaluation Studies; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Chromatin; 0 / Epitopes; 0 / Fluorescent Dyes; 0 / Histones; 0 / Proteins; 0 / Recombinant Fusion Proteins; EC 2.7.7.- / Cre recombinase; EC 2.7.7.- / Integrases; EC 3.4.25.1 / Proteasome Endopeptidase Complex
  • [Other-IDs] NLM/ PMC2806724
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74. Lewandowski AT, Yi H, Luo X, Payne GF, Ghodssi R, Rubloff GW, Bentley WE: Protein assembly onto patterned microfabricated devices through enzymatic activation of fusion pro-tag. Biotechnol Bioeng; 2008 Feb 15;99(3):499-507
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Protein assembly onto patterned microfabricated devices through enzymatic activation of fusion pro-tag.
  • Our approach is based on electro-assembly of the aminopolysaccharide chitosan scaffold as a stable thin film onto patterned conductive surfaces of the device, which is followed by covalent assembly of the target protein onto the scaffold surface upon enzymatic activation of the protein's "pro-tag."
  • For our demonstration, the model target protein is green fluorescent protein (GFP) genetically fused with a pentatyrosine pro-tag at its C-terminus, which assembles onto both two-dimensional chips and within fully packaged microfluidic devices in situ and under flow.

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  • [Copyright] (c) 2007 Wiley Periodicals, Inc.
  • (PMID = 17625789.001).
  • [ISSN] 1097-0290
  • [Journal-full-title] Biotechnology and bioengineering
  • [ISO-abbreviation] Biotechnol. Bioeng.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Recombinant Fusion Proteins; EC 1.14.18.1 / Monophenol Monooxygenase
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75. Bang D, Kent SB: His6 tag-assisted chemical protein synthesis. Proc Natl Acad Sci U S A; 2005 Apr 5;102(14):5014-9
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] His6 tag-assisted chemical protein synthesis.
  • The synthetic technique makes use of a His6 tag at the C terminus of the target polypeptide chain, introduced during the synthesis of the C-terminal peptide segment building block.
  • The presence of a His6 tag enables the isolation of peptide or protein products directly from ligation reaction mixtures by Ni-NTA affinity column purification.
  • The results show that His6 tag-assisted chemical protein synthesis is a useful method that substantially reduces handling losses and provides for rapid chemical protein syntheses.

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  • (PMID = 15784744.001).
  • [ISSN] 0027-8424
  • [Journal-full-title] Proceedings of the National Academy of Sciences of the United States of America
  • [ISO-abbreviation] Proc. Natl. Acad. Sci. U.S.A.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Ligands; 0 / Oligopeptides; 0 / Plant Proteins; 0 / Proteins; 4QD397987E / Histidine; 78783-34-3 / crambin protein, Crambe abyssinica
  • [Other-IDs] NLM/ PMC555969
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76. Engin S, Trouillet V, Franz CM, Welle A, Bruns M, Wedlich D: Benzylguanine thiol self-assembled monolayers for the immobilization of SNAP-tag proteins on microcontact-printed surface structures. Langmuir; 2010 May 4;26(9):6097-101
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Benzylguanine thiol self-assembled monolayers for the immobilization of SNAP-tag proteins on microcontact-printed surface structures.
  • Here we describe the preparation of self-assembled monolayers consisting of benzylguanine thiols (BGT) to which SNAP-tag fusion proteins can be covalently linked.
  • The SNAP-tag, a modified O(6)-alkylguanine-DNA alkyltransferase (AGT), reacts with the headgroup of BGT and becomes covalently bound upon the release of guanine.
  • Bacterially produced recombinant His-tag-SNAP-tag-GFP was used to demonstrate the site-specific immobilization on BGT surface patterns created by microcontact printing (microCP).
  • With this versatile method, any SNAP-tag protein can be coupled to a surface.

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  • (PMID = 20369837.001).
  • [ISSN] 1520-5827
  • [Journal-full-title] Langmuir : the ACS journal of surfaces and colloids
  • [ISO-abbreviation] Langmuir
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Enzymes, Immobilized; 0 / Guanidines; 0 / Recombinant Fusion Proteins; EC 2.1.1.63 / O(6)-Methylguanine-DNA Methyltransferase
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77. Willer CJ, Scott LJ, Bonnycastle LL, Jackson AU, Chines P, Pruim R, Bark CW, Tsai YY, Pugh EW, Doheny KF, Kinnunen L, Mohlke KL, Valle TT, Bergman RN, Tuomilehto J, Collins FS, Boehnke M: Tag SNP selection for Finnish individuals based on the CEPH Utah HapMap database. Genet Epidemiol; 2006 Feb;30(2):180-90
NCI CPTAC Assay Portal. NCI CPTAC Assay Portal .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Tag SNP selection for Finnish individuals based on the CEPH Utah HapMap database.
  • A key goal of the HapMap Project is to enable identification of tag single nucleotide polymorphisms (SNPs) that capture a substantial portion of common human genetic variability while requiring only a small fraction of SNPs to be genotyped [International HapMap Consortium, 2005: Nature 437:1299-1320].
  • In the current study, we examined the effectiveness of using the CEU HapMap database to select tag SNPs for a Finnish sample.
  • Our results demonstrate that the HapMap CEU samples provide an adequate basis for tag SNP selection in Finnish individuals, without the need to create a map specifically for the Finnish population, and suggest that the four-population HapMap data will provide useful information for tag SNP selection beyond the specific populations from which they were sampled.

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  • [Copyright] (c) 2005 Wiley-Liss, Inc.
  • (PMID = 16374835.001).
  • [ISSN] 0741-0395
  • [Journal-full-title] Genetic epidemiology
  • [ISO-abbreviation] Genet. Epidemiol.
  • [Language] ENG
  • [Grant] United States / NHGRI NIH HHS / HG / R01 HG 00376; United States / NHGRI NIH HHS / HG / N01 HG 65403; United States / NIDDK NIH HHS / DK / R01 DK 62370; United States / NIOSH CDC HHS / OH / OH95-C-N030; United States / NIDDK NIH HHS / DK / R01 DK029867
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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78. Asano R, Ikoma K, Kawaguchi H, Ishiyama Y, Nakanishi T, Umetsu M, Hayashi H, Katayose Y, Unno M, Kudo T, Kumagai I: Application of the Fc fusion format to generate tag-free bi-specific diabodies. FEBS J; 2010 Jan;277(2):477-87
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Application of the Fc fusion format to generate tag-free bi-specific diabodies.
  • We previously reported the use of a humanized bi-specific diabody that targets epidermal growth factor receptor and CD3 (hEx3-Db) for cancer immunotherapy.
  • Bacterial expression can be used to express small recombinant antibodies on a large scale; however, their overexpression often results in the formation of insoluble aggregates, and in most cases artificial affinity peptide tags need to be fused to the antibodies for purification by affinity chromatography.
  • Here, we propose a novel method for preparing refined, functional, tag-free bi-specific diabodies from IgG-like bi-specific antibodies (BsAbs) in a mammalian expression system.
  • The BsAb was purified by protein A affinity chromatography, and the refined tag-free hEx3-Db was efficiently produced from the Fc fusion format by protease digestion.
  • The tag-free hEx3-Db from the Fc fusion format showed a greater inhibition of cancer growth than affinity-tagged hEx3-Db prepared directly from Chinese hamster ovary cells.
  • This approach may be used for industrial-scale production of functional tag-free small therapeutic antibodies.

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  • (PMID = 20015073.001).
  • [ISSN] 1742-4658
  • [Journal-full-title] The FEBS journal
  • [ISO-abbreviation] FEBS J.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Antibodies, Bispecific; 0 / Immunoglobulin Fc Fragments; 0 / Recombinant Fusion Proteins; EC 3.4.- / Peptide Hydrolases
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79. Diethrich EB: Gore TAG Thoracic Endoprosthesis: the first US FDA-approved thoracic endograft. Expert Rev Med Devices; 2006 Sep;3(5):557-64

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Gore TAG Thoracic Endoprosthesis: the first US FDA-approved thoracic endograft.
  • Clinical trials of the Gore TAG Thoracic Endoprosthesis device indicate that subjects receiving the graft are less likely to experience major adverse events, less intraprocedural blood loss, shorter intensive care unit and hospital stays, and reduced recovery times than surgical patients.
  • This article profiles the TAG device and evaluates endografting technology in general.

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  • (PMID = 17064241.001).
  • [ISSN] 1743-4440
  • [Journal-full-title] Expert review of medical devices
  • [ISO-abbreviation] Expert Rev Med Devices
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
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80. Wu HC, Shi XW, Tsao CY, Lewandowski AT, Fernandes R, Hung CW, DeShong P, Kobatake E, Valdes JJ, Payne GF, Bentley WE: Biofabrication of antibodies and antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag. Biotechnol Bioeng; 2009 Jun 1;103(2):231-40
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  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Biofabrication of antibodies and antigens via IgG-binding domain engineered with activatable pentatyrosine pro-tag.
  • This is enabled by the creation of an engineered IgG-binding domain (HG3T) with an N-terminal hexahistidine tag that facilitates purification and a C-terminal enzyme-activatable pentatyrosine "pro-tag" that facilitates covalent coupling to the pH stimuli-responsive polysaccharide, chitosan.
  • We believe biologically based fabrication (i.e., biofabrication) provides bottom-up hierarchical assembly of a variety of nanoscale components for applications that range from point-of-care diagnostics to smart fabrics.

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  • [Copyright] Copyright 2008 Wiley Periodicals, Inc.
  • (PMID = 19224560.001).
  • [ISSN] 1097-0290
  • [Journal-full-title] Biotechnology and bioengineering
  • [ISO-abbreviation] Biotechnol. Bioeng.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Antibodies; 0 / Antigens; 0 / Macromolecular Substances; 0 / Recombinant Fusion Proteins; 9012-76-4 / Chitosan
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81. Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, Edrington TS: Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol; 2008;8:125
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP).
  • Here we have utilized a bacterial tag-encoded FLX 16s rDNA amplicon pyrosequencing (bTEFAP) approach that is able to perform diversity analyses of gastrointestinal populations. bTEFAP is relatively inexpensive in terms of both time and labor due to the implementation of a novel tag priming method and an efficient bioinformatics pipeline.

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  • (PMID = 18652685.001).
  • [ISSN] 1471-2180
  • [Journal-full-title] BMC microbiology
  • [ISO-abbreviation] BMC Microbiol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 0 / DNA, Bacterial; 0 / DNA, Ribosomal; 0 / RNA, Ribosomal, 16S
  • [Other-IDs] NLM/ PMC2515157
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82. Malig R, Varela C, Agosin E, Melo F: Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression. BMC Bioinformatics; 2006;7:487
Saccharomyces Genome Database. Saccharomyces Genome Database .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression.
  • BACKGROUND: In this study, we present a robust and reliable computational method for tag-to-gene assignment in serial analysis of gene expression (SAGE).
  • The method provides a complete annotation of potential virtual SAGE tags within a genome, along with an estimation of their confidence for experimental observation that ranks tags that present multiple matches in the genome.
  • RESULTS: We applied this method to the Saccharomyces cerevisiae genome, producing the most thorough and accurate annotation of potential virtual SAGE tags that is available today for this organism.
  • First, we found that experimental SAGE tags mapping onto introns, intron-exon boundaries, and non-coding RNA elements are observed in all available SAGE data.
  • Second, a significant fraction of experimental SAGE tags was found to map onto genomic regions currently annotated as intergenic.
  • Third, a significant number of existing experimental SAGE tags for yeast has been derived from truncated cDNAs, which are synthesized through oligo-d(T) priming to internal poly-(A) regions during reverse transcription.
  • CONCLUSION: We conclude that an accurate and unambiguous tag mapping process is essential to increase the quality and the amount of information that can be extracted from SAGE experiments.
  • [MeSH-minor] Computational Biology. DNA, Complementary / genetics. Databases, Genetic. Expressed Sequence Tags. RNA, Fungal / genetics. RNA, Messenger / genetics. RNA, Untranslated / genetics. Reproducibility of Results. Restriction Mapping. Sequence Analysis, DNA. Sequence Analysis, RNA. Transcription, Genetic

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  • (PMID = 17083742.001).
  • [ISSN] 1471-2105
  • [Journal-full-title] BMC bioinformatics
  • [ISO-abbreviation] BMC Bioinformatics
  • [Language] eng
  • [Publication-type] Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / DNA, Complementary; 0 / RNA, Fungal; 0 / RNA, Messenger; 0 / RNA, Untranslated; 0 / Saccharomyces cerevisiae Proteins
  • [Other-IDs] NLM/ PMC1637119
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83. Chang CJ, Huang YT, Chao KM: A greedier approach for finding tag SNPs. Bioinformatics; 2006 Mar 15;22(6):685-91

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] A greedier approach for finding tag SNPs.
  • MOTIVATION: Recent studies have shown that a small subset of Single Nucleotide Polymorphisms (SNPs) (called tag SNPs) is sufficient to capture the haplotype patterns in a high linkage disequilibrium region.
  • To find the minimum set of tag SNPs, exact algorithms for finding the optimal solution could take exponential time.
  • [MeSH-major] Algorithms. Chromosome Mapping / methods. DNA Mutational Analysis / methods. Expressed Sequence Tags. Polymorphism, Single Nucleotide / genetics. Sequence Alignment / methods. Sequence Analysis, DNA / methods

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  • (PMID = 16403792.001).
  • [ISSN] 1367-4803
  • [Journal-full-title] Bioinformatics (Oxford, England)
  • [ISO-abbreviation] Bioinformatics
  • [Language] eng
  • [Publication-type] Evaluation Studies; Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] England
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84. Shen A, Lupardus PJ, Morell M, Ponder EL, Sadaghiani AM, Garcia KC, Bogyo M: Simplified, enhanced protein purification using an inducible, autoprocessing enzyme tag. PLoS One; 2009 Dec 02;4(12):e8119
eagle-i research resources. PMID 19956581 (Special Collections) .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Simplified, enhanced protein purification using an inducible, autoprocessing enzyme tag.
  • We introduce a new method for purifying recombinant proteins expressed in bacteria using a highly specific, inducible, self-cleaving protease tag.
  • This tag is comprised of the Vibrio cholerae MARTX toxin cysteine protease domain (CPD), an autoprocessing enzyme that cleaves exclusively after a leucine residue within the target protein-CPD junction.
  • This method condenses affinity chromatography and fusion tag cleavage into a single step, obviating the need for exogenous protease addition to remove the fusion tag(s) and increasing the efficiency of tag separation.

  • COS Scholar Universe. author profiles.
  • Addgene Non-profit plasmid repository. clones/clone libraries - Get Article's Plasmids - Addgene (subscription/membership/fee required).
  • Hazardous Substances Data Bank. (L)-HISTIDINE .
  • The Lens. Cited by Patents in .
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  • (PMID = 19956581.001).
  • [ISSN] 1932-6203
  • [Journal-full-title] PloS one
  • [ISO-abbreviation] PLoS ONE
  • [Language] ENG
  • [Grant] United States / NIAID NIH HHS / AI / R01 AI078947; United States / NIBIB NIH HHS / EB / R01 EB005011; United States / NIAID NIH HHS / AI / T32 AI007328; United States / Howard Hughes Medical Institute / /
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / His-His-His-His-His-His; 0 / Oligopeptides; 0 / Protozoan Proteins; 0 / Recombinant Fusion Proteins; 4QD397987E / Histidine; EC 3.4.- / Peptide Hydrolases; EC 3.4.24.65 / Matrix Metalloproteinase 12; EC 6.2.1.- / Coenzyme A Ligases; EC 6.2.1.11 / biotin-CoA ligase
  • [Other-IDs] NLM/ PMC2780291
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85. Melis R, Lyon E, McMillin GA: Determination of CYP2D6, CYP2C9 and CYP2C19 genotypes with Tag-It mutation detection assays. Expert Rev Mol Diagn; 2006 Nov;6(6):811-20
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Determination of CYP2D6, CYP2C9 and CYP2C19 genotypes with Tag-It mutation detection assays.
  • Based on the specific CYP(s) affected, individuals may require less or more of a particular drug than people with unaffected CYP-mediated metabolism, or may be best managed by avoiding certain drugs entirely.
  • Here we evaluated the Tag-It CYP mutation detection reagents (Tm Bioscience Corp.).
  • Using these samples, the Tag-It mutation detections assays reliably provided genotypes for CYP2D6, CYP2C9 and CYP2C19.

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  • (PMID = 17140368.001).
  • [ISSN] 1744-8352
  • [Journal-full-title] Expert review of molecular diagnostics
  • [ISO-abbreviation] Expert Rev. Mol. Diagn.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 9007-49-2 / DNA; EC 1.- / Mixed Function Oxygenases; EC 1.14.13.- / CYP2C9 protein, human; EC 1.14.13.- / Cytochrome P-450 CYP2C19; EC 1.14.13.- / Cytochrome P-450 CYP2C9; EC 1.14.14.1 / Aryl Hydrocarbon Hydroxylases; EC 1.14.14.1 / CYP2C19 protein, human; EC 1.14.14.1 / Cytochrome P-450 CYP2D6
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86. Allen M, Divne AM: Universal tag arrays in forensic SNP analysis. Methods Mol Biol; 2005;297:141-54
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Universal tag arrays in forensic SNP analysis.
  • Microarray-based single nucleotide polymorphism (SNP) genotyping enables simultaneous and rapid detection of a large number of markers and is thus an attractive method for forensic individual acid identification.
  • This assay relies on a one-color detection system and minisequencing in solution before hybridization to universal tag arrays.
  • The minisequencing reaction is based on incorporation of a fluorescent dideoxynucleotide to a primer containing a tag-sequence flanking the position to be interrogated.

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  • (PMID = 15570105.001).
  • [ISSN] 1064-3745
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / DNA Primers
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87. Wu WY, Mee C, Califano F, Banki R, Wood DW: Recombinant protein purification by self-cleaving aggregation tag. Nat Protoc; 2006;1(5):2257-62
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Recombinant protein purification by self-cleaving aggregation tag.
  • This method is based on a reversibly precipitating, self-cleaving purification tag.
  • The tag is made up of two components: an elastin-like polypeptide (ELP), which reversibly self-associates in high-salt buffers at temperatures above 30 degrees C; and an intein, which causes the ELP tag to self-cleave in response to a mild pH shift.
  • Once purified, intein-mediated self-cleavage, followed by precipitation of the cleaved ELP tag, allows easy and effective isolation of the pure, native target protein without the need for chromatographic separations.

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  • (PMID = 17406465.001).
  • [ISSN] 1750-2799
  • [Journal-full-title] Nature protocols
  • [ISO-abbreviation] Nat Protoc
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Peptides; 0 / Recombinant Proteins; 147336-22-9 / Green Fluorescent Proteins
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88. Su XC, Huber T, Dixon NE, Otting G: Site-specific labelling of proteins with a rigid lanthanide-binding tag. Chembiochem; 2006 Oct;7(10):1599-604
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Site-specific labelling of proteins with a rigid lanthanide-binding tag.
  • The method is demonstrated by the attachment of a lanthanide-binding peptide tag to the single cysteine residue present in the N-terminal DNA-binding domain of the Escherichia coli arginine repressor.
  • Large pseudocontact shifts and residual dipolar couplings were induced by the lanthanide-binding tag in the protein NMR spectrum, a result indicating that the tag was rigidly attached to the protein.
  • A single tag with a single protein attachment site can provide different pseudocontact shifts from different magnetic susceptibility tensors and thus provide valuable nondegenerate long-range structure information in the determination of 3D protein structures by NMR spectroscopy.

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  • (PMID = 16927254.001).
  • [ISSN] 1439-4227
  • [Journal-full-title] Chembiochem : a European journal of chemical biology
  • [ISO-abbreviation] Chembiochem
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] Germany
  • [Chemical-registry-number] 0 / Disulfides; 0 / Lanthanoid Series Elements; 0 / Peptides; 0 / Proteins; K848JZ4886 / Cysteine
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89. Carrel FR, Seeberger PH: Cap-and-tag solid phase oligosaccharide synthesis. J Org Chem; 2008 Mar 21;73(6):2058-65
NCI CPTAC Assay Portal. NCI CPTAC Assay Portal .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Cap-and-tag solid phase oligosaccharide synthesis.
  • A new "cap-and-tag" strategy is applied to solid phase oligosaccharide synthesis.

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  • (PMID = 17956118.001).
  • [ISSN] 0022-3263
  • [Journal-full-title] The Journal of organic chemistry
  • [ISO-abbreviation] J. Org. Chem.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Glycosides; 0 / Oligosaccharides; IY9XDZ35W2 / Glucose; PHA4727WTP / Mannose
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90. Watanabe S, Mizukami S, Hori Y, Kikuchi K: Multicolor protein labeling in living cells using mutant β-lactamase-tag technology. Bioconjug Chem; 2010 Dec 15;21(12):2320-6
NCI CPTAC Assay Portal. NCI CPTAC Assay Portal .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Multicolor protein labeling in living cells using mutant β-lactamase-tag technology.
  • Previously, we reported a novel protein labeling system based on the combination of a mutant β-lactamase (BL-tag) with coumarin-derivatized probes and its application to specific protein labeling on cell membranes.
  • In this paper, we demonstrated the broad applicability of our BL-tag technology to live cell imaging by the development of a series of fluorescence labeling probes for this technology, and the examination of the functions of target proteins.
  • These probes were used to specifically label the BL-tag protein and could be used with other small molecule fluorescent probes.
  • Highly specific and fast covalent labeling properties of this labeling technology is expected to provide robust tools for investigating protein functions in living cells, and future applications can be improved by combining the BL-tag technology with conventional imaging techniques.

  • Hazardous Substances Data Bank. FLUORESCEIN .
  • Hazardous Substances Data Bank. D&C Yellow No. 8 .
  • Hazardous Substances Data Bank. COUMARIN .
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  • (PMID = 20961132.001).
  • [ISSN] 1520-4812
  • [Journal-full-title] Bioconjugate chemistry
  • [ISO-abbreviation] Bioconjug. Chem.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Bacterial Proteins; 0 / Coumarins; 0 / Fluorescent Dyes; 0 / Recombinant Fusion Proteins; 0 / Rhodamines; 147336-22-9 / Green Fluorescent Proteins; A4VZ22K1WT / coumarin; EC 3.5.2.6 / beta-Lactamases; TPY09G7XIR / Fluorescein
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91. Maldjian JA, Laurienti PJ, Burdette JH, Kraft RA: Clinical implementation of spin-tag perfusion magnetic resonance imaging. J Comput Assist Tomogr; 2008 May-Jun;32(3):403-6
COS Scholar Universe. author profiles.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Clinical implementation of spin-tag perfusion magnetic resonance imaging.
  • Here, we describe a fully automated pipeline for clinical implementation of a magnetic resonance spin-tag perfusion sequence that can be extended to any studies requiring off-line processing.

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  • (PMID = 18520545.001).
  • [ISSN] 0363-8715
  • [Journal-full-title] Journal of computer assisted tomography
  • [ISO-abbreviation] J Comput Assist Tomogr
  • [Language] eng
  • [Grant] United States / NIBIB NIH HHS / EB / EB 004673; United States / NINDS NIH HHS / NS / NS 042568
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
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92. Banke NH, Wende AR, Leone TC, O'Donnell JM, Abel ED, Kelly DP, Lewandowski ED: Preferential oxidation of triacylglyceride-derived fatty acids in heart is augmented by the nuclear receptor PPARalpha. Circ Res; 2010 Jul 23;107(2):233-41
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Preferential oxidation of triacylglyceride-derived fatty acids in heart is augmented by the nuclear receptor PPARalpha.
  • However, the contribution of endogenous triacylglyceride (TAG) turnover to LCFA oxidation and the overall dependence of mitochondrial oxidation on endogenous lipid is largely unstudied.
  • OBJECTIVE: We sought to determine the role of TAG turnover in supporting LCFA oxidation and the influence of the lipid-activated nuclear receptor, proliferator-activated receptor (PPAR)alpha, on this balance.
  • METHODS AND RESULTS: Palmitoyl turnover within TAG and palmitate oxidation rates were quantified in isolated hearts, from normal mice (nontransgenic) and mice with cardiac-specific overexpression of PPARalpha (MHC-PPARalpha).
  • Turnover of palmitoyl units within TAG, and thus palmitoyl-coenzyme A recycling, in nontransgenic (4.5+/-2.3 micromol/min per gram dry weight) was 3.75-fold faster than palmitate oxidation (1.2+/-0.4).
  • This high rate of palmitoyl unit turnover indicates preferential oxidation of palmitoyl units derived from TAG in normal hearts.
  • PPARalpha overexpression augmented TAG turnover 3-fold over nontransgenic hearts, despite similar fractions of acetyl-coenzyme A synthesis from palmitate and oxygen use at the same workload.
  • Palmitoyl turnover within TAG of MHC-PPARalpha hearts (16.2+/-2.9, P<0.05) was 12.5-fold faster than oxidation (1.3+/-0.2).
  • Elevated TAG turnover in MHC-PPARalpha correlated with increased mRNA for enzymes involved in both TAG synthesis, Gpam (glycerol-3-phosphate acyltransferase, mitochondrial), Dgat1 (diacylglycerol acetyltransferase 1), and Agpat3 (1-acylglycerol-3-phospate O-acyltransferase 3), and lipolysis, Pnliprp1 (pancreatic lipase related protein 1).
  • CONCLUSIONS: The role of endogenous TAG in supporting beta-oxidation in the normal heart is much more dynamic than previously thought, and lipolysis provides the bulk of LCFA for oxidation.
  • Accelerated palmitoyl turnover in TAG, attributable to chronic PPARalpha activation, results in near requisite oxidation of LCFAs from TAG.

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  • Hazardous Substances Data Bank. PALMITIC ACID .
  • KOMP Repository. gene/protein/disease-specific - KOMP Repository (subscription/membership/fee required).
  • Mouse Genome Informatics (MGI). Mouse Genome Informatics (MGI) .
  • NCI CPTC Antibody Characterization Program. NCI CPTC Antibody Characterization Program .
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  • (PMID = 20522803.001).
  • [ISSN] 1524-4571
  • [Journal-full-title] Circulation research
  • [ISO-abbreviation] Circ. Res.
  • [Language] ENG
  • [Grant] United States / NHLBI NIH HHS / HL / R01HL62702; United States / NHLBI NIH HHS / HL / HL062702-08; United States / NHLBI NIH HHS / HL / R01 HL062702; United States / NHLBI NIH HHS / HL / R01 HL062702-08; United States / NHLBI NIH HHS / HL / R37HL49244; United States / NHLBI NIH HHS / HL / T32HL07692; United States / NHLBI NIH HHS / HL / T32 HL007692; United States / NHLBI NIH HHS / HL / R37 HL049244; United States / NHLBI NIH HHS / HL / R37 HL049244-17; United States / NHLBI NIH HHS / HL / HL049244-17
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Cardiotonic Agents; 0 / PPAR alpha; 0 / RNA, Messenger; 0 / Triglycerides; 1763-10-6 / Palmitoyl Coenzyme A; 2V16EO95H1 / Palmitic Acid; 72-89-9 / Acetyl Coenzyme A; EC 2.3.1.15 / Glycerol-3-Phosphate O-Acyltransferase; EC 2.3.1.20 / Dgat1 protein, mouse; EC 2.3.1.20 / Diacylglycerol O-Acyltransferase; EC 2.3.1.51 / 1-Acylglycerol-3-Phosphate O-Acyltransferase; EC 3.1.1.3 / Lipase; EC 3.1.1.3 / pancreatic lipase-related protein 1; L628TT009W / Isoproterenol
  • [Other-IDs] NLM/ NIHMS213413; NLM/ PMC2921193
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93. Lenert LA, Palmer DA, Chan TC, Rao R: An Intelligent 802.11 Triage Tag for medical response to disasters. AMIA Annu Symp Proc; 2005;:440-4
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] An Intelligent 802.11 Triage Tag for medical response to disasters.
  • Paper triage tags are often used to mark victims' triage status and to record information on injuries and treatments administered in the field.
  • In this paper we describe the design and development of an"Intelligent Triage Tag" (ITT), an electronic device to coordinate patient field care.
  • ITTs combine the basic functionality of a paper triage tag with sensors, nonvolatile memory, a microprocessor and 802.11 wireless transmission capabilities.

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  • (PMID = 16779078.001).
  • [ISSN] 1942-597X
  • [Journal-full-title] AMIA ... Annual Symposium proceedings. AMIA Symposium
  • [ISO-abbreviation] AMIA Annu Symp Proc
  • [Language] ENG
  • [Grant] United States / NLM NIH HHS / LM / N01-LM-3-3511
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural
  • [Publication-country] United States
  • [Other-IDs] NLM/ PMC1560742
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94. Tirat A, Freuler F, Stettler T, Mayr LM, Leder L: Evaluation of two novel tag-based labelling technologies for site-specific modification of proteins. Int J Biol Macromol; 2006 Aug 15;39(1-3):66-76
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Evaluation of two novel tag-based labelling technologies for site-specific modification of proteins.
  • For some applications, proteins have to be produced with specific modifications such as tags for protein purification, fluorescent or radiometric labels for detection, glycosylation and phosphorylation for biological activity, and many more.
  • Firstly, we explored a method based on the human DNA repair protein O6-alkylguanine-DNA alkyltransferase (hAGT) as a fusion tag for site-directed attachment of small molecules.
  • The AGT-tag (SNAP-tag) can accept almost any chemical moiety when it is attached to the guanine base through a benzyl group.
  • In our experiments we were able to label a target protein fused to the AGT-tag with various fluorophores coupled to O6-benzylguanine.
  • Secondly, we tested in vivo and in vitro site-directed biotinylation with two different tags, consisting of either 15 (AviTag) or 72 amino acids (BioEase tag), which serve as a substrate for bacterial biotin ligase birA.
  • When birA protein was co-expressed in E. coli biotin was incorporated almost completely into a model protein which carried these recognition tags at its C-terminus.
  • For both biotinylation methods, peptide mapping and LC-MS proved the highly site-specific modification of the corresponding tags.

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  • (PMID = 16503347.001).
  • [ISSN] 0141-8130
  • [Journal-full-title] International journal of biological macromolecules
  • [ISO-abbreviation] Int. J. Biol. Macromol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Escherichia coli Proteins; 0 / Fluorescent Dyes; 0 / Recombinant Fusion Proteins; 0 / Repressor Proteins; 0 / Transcription Factors; 12133JR80S / Guanosine; 6SO6U10H04 / Biotin; EC 2.1.1.63 / O(6)-Methylguanine-DNA Methyltransferase; EC 6.3.- / Carbon-Nitrogen Ligases; EC 6.3.4.15 / birA protein, E coli
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95. Maradeo ME, Skibbens RV: Epitope tag-induced synthetic lethality between cohesin subunits and Ctf7/Eco1 acetyltransferase. FEBS Lett; 2010 Sep 24;584(18):4037-40
Saccharomyces Genome Database. Saccharomyces Genome Database .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Epitope tag-induced synthetic lethality between cohesin subunits and Ctf7/Eco1 acetyltransferase.
  • Here, we use epitope tag-induced lethality in cells diminished for Ctf7/Eco1 activity to map cohesin architecture in vivo.
  • We further demonstrate that mutation in ELG1 or RFC5 anti-establishment genes suppress tag-induced lethality, consistent with the notion that the replication fork regulates Ctf7/Eco1.

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  • [Copyright] Copyright © 2010 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
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  • (PMID = 20728441.001).
  • [ISSN] 1873-3468
  • [Journal-full-title] FEBS letters
  • [ISO-abbreviation] FEBS Lett.
  • [Language] ENG
  • [Grant] United States / NIGMS NIH HHS / GM / R15 GM083269; None / None / / R15 GM083269-01; United States / NIGMS NIH HHS / GM / 1R15GM083269; United States / NIGMS NIH HHS / GM / R15 GM083269-01
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] England
  • [Chemical-registry-number] 0 / Carrier Proteins; 0 / Cell Cycle Proteins; 0 / Chromosomal Proteins, Non-Histone; 0 / Elg1 protein, S cerevisiae; 0 / IRR1 protein, S cerevisiae; 0 / MCD1 protein, S cerevisiae; 0 / Nuclear Proteins; 0 / Saccharomyces cerevisiae Proteins; 0 / cohesins; 0 / structural maintenance of chromosome protein 1; EC 2.3.1.- / Acetyltransferases; EC 2.3.1.- / ECO1 protein, S cerevisiae
  • [Other-IDs] NLM/ NIHMS230818; NLM/ PMC2946494
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96. Han B, Kang HM, Seo MS, Zaitlen N, Eskin E: Efficient association study design via power-optimized tag SNP selection. Ann Hum Genet; 2008 Nov;72(Pt 6):834-47
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Efficient association study design via power-optimized tag SNP selection.
  • Since fully resequencing a cohort is prohibitively costly, genetic association studies take advantage of local correlation structure (or linkage disequilibrium) between single nucleotide polymorphisms (SNPs) by selecting a subset of SNPs to be genotyped (tag SNPs).
  • While many current association studies are performed using commercially available high-throughput genotyping products that define a set of tag SNPs, choosing tag SNPs remains an important problem for both custom follow-up studies as well as designing the high-throughput genotyping products themselves.
  • The most widely used tag SNP selection method optimizes the correlation between SNPs (r(2)).
  • However, tag SNPs chosen based on an r(2) criterion do not necessarily maximize the statistical power of an association study.
  • Empirical results based on the HapMap data show that our method gains considerable power over a widely used r(2)-based method, or equivalently reduces the number of tag SNPs required to attain the desired power of a study.
  • Our power-optimized 100k whole genome tag set provides equivalent power to the Affymetrix 500k chip for the CEU population.
  • For the design of custom follow-up studies, our method provides up to twice the power increase using the same number of tag SNPs as r(2)-based methods.

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  • (PMID = 18702637.001).
  • [ISSN] 1469-1809
  • [Journal-full-title] Annals of human genetics
  • [ISO-abbreviation] Ann. Hum. Genet.
  • [Language] ENG
  • [Grant] United States / NHLBI NIH HHS / HL / HL080079-03; United States / NHLBI NIH HHS / HL / K25 HL080079-04; United States / NCRR NIH HHS / RR / C06 RR017588; United States / NCRR NIH HHS / RR / P41 RR08605; United States / NHLBI NIH HHS / HL / K25 HL080079; United States / NHLBI NIH HHS / HL / 1K25HL080079; United States / NHLBI NIH HHS / HL / K25 HL080079-03; United States / NCRR NIH HHS / RR / P41 RR008605; United States / NHLBI NIH HHS / HL / HL080079-04
  • [Publication-type] Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
  • [Publication-country] England
  • [Other-IDs] NLM/ NIHMS58335; NLM/ PMC2574965
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97. Baldwin K, Namdari S, Andersen JR, Lee B, Itamura JM, Huffman GR: Luggage tag technique of anatomic fixation of displaced acromioclavicular joint separations. Clin Orthop Relat Res; 2010 Jan;468(1):259-65
MedlinePlus Health Information. consumer health - Shoulder Injuries and Disorders.

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Luggage tag technique of anatomic fixation of displaced acromioclavicular joint separations.
  • We present a modification of the anatomic fixation technique using a luggage tag method, which places a graft under the base of the coracoid.
  • We found the luggage tag technique provides anatomic fixation of the distal clavicle and restoration of coronal and sagittal plane stability to the injured acromioclavicular joint.

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  • (PMID = 19421827.001).
  • [ISSN] 1528-1132
  • [Journal-full-title] Clinical orthopaedics and related research
  • [ISO-abbreviation] Clin. Orthop. Relat. Res.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
  • [Other-IDs] NLM/ PMC2795829
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98. Emmersen J: Generating unigene collections of expressed sequence tag sequences for use in mass spectrometry identification. Methods Mol Biol; 2007;367:77-86

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Generating unigene collections of expressed sequence tag sequences for use in mass spectrometry identification.
  • Expressed sequence tag sequences remain the largest resource of DNA sequence for most organisms despite recent advances in genome sequencing.
  • [MeSH-major] Databases, Nucleic Acid. Expressed Sequence Tags. Mass Spectrometry / methods. Sequence Analysis, DNA / methods

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  • (PMID = 17185771.001).
  • [ISSN] 1064-3745
  • [Journal-full-title] Methods in molecular biology (Clifton, N.J.)
  • [ISO-abbreviation] Methods Mol. Biol.
  • [Language] eng
  • [Publication-type] Journal Article
  • [Publication-country] United States
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99. de Bakker PI, Burtt NP, Graham RR, Guiducci C, Yelensky R, Drake JA, Bersaglieri T, Penney KL, Butler J, Young S, Onofrio RC, Lyon HN, Stram DO, Haiman CA, Freedman ML, Zhu X, Cooper R, Groop L, Kolonel LN, Henderson BE, Daly MJ, Hirschhorn JN, Altshuler D: Transferability of tag SNPs in genetic association studies in multiple populations. Nat Genet; 2006 Nov;38(11):1298-303
The Lens. Cited by Patents in .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Transferability of tag SNPs in genetic association studies in multiple populations.
  • A general question for linkage disequilibrium-based association studies is how power to detect an association is compromised when tag SNPs are chosen from data in one population sample and then deployed in another sample.
  • Specifically, it is important to know how well tags picked from the HapMap DNA samples capture the variation in other samples.
  • We picked tag SNPs using genotype data we collected in the HapMap samples and then evaluated the effective coverage of these tags in comparison to the entire set of common variants observed in the other samples.
  • These results demonstrate that the HapMap DNA samples can be used to select tags for genome-wide association studies in many samples around the world.

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  • [CommentIn] Nat Genet. 2006 Nov;38(11):1227-8 [17072295.001]
  • (PMID = 17057720.001).
  • [ISSN] 1061-4036
  • [Journal-full-title] Nature genetics
  • [ISO-abbreviation] Nat. Genet.
  • [Language] eng
  • [Grant] United States / NCI NIH HHS / CA / CA098758; United States / NCI NIH HHS / CA / CA54281; United States / NCI NIH HHS / CA / CA63464; United States / NIDDK NIH HHS / DK / DK067288; United States / NHLBI NIH HHS / HL / HL074166
  • [Publication-type] Evaluation Studies; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
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100. Keppler A, Ellenberg J: Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells. ACS Chem Biol; 2009 Feb 20;4(2):127-38
Hazardous Substances Data Bank. D&C Yellow No. 8 .

  • [Source] The source of this record is MEDLINE®, a database of the U.S. National Library of Medicine.
  • [Title] Chromophore-assisted laser inactivation of alpha- and gamma-tubulin SNAP-tag fusion proteins inside living cells.
  • Covalent SNAP-tag labeling of fusion proteins with fluorophores such as fluorescein is a fast and highly specific tool to attach the photosensitizer to its target protein in vivo for selective inactivation of the fusion protein.
  • Here, we demonstrate the effectiveness and specificity of SNAP-tag-based CALI by acute inactivation of alpha-tubulin and gamma-tubulin SNAP-tag fusions during live imaging assays of cell division.
  • The major advantage of SNAP-tag CALI is the ease, reliability, and high flexibility in labeling: the genetically encoded protein tag can be covalently labeled with various dyes matching the experimental requirements.
  • This makes SNAP-tag CALI a very useful tool for rapid inactivation of tagged proteins in living cells.

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  • (PMID = 19191588.001).
  • [ISSN] 1554-8937
  • [Journal-full-title] ACS chemical biology
  • [ISO-abbreviation] ACS Chem. Biol.
  • [Language] eng
  • [Publication-type] Journal Article; Research Support, Non-U.S. Gov't
  • [Publication-country] United States
  • [Chemical-registry-number] 0 / Fluorescent Dyes; 0 / Photosensitizing Agents; 0 / Recombinant Fusion Proteins; 0 / Tubulin; 17778-80-2 / Singlet Oxygen; EC 2.1.1.63 / O(6)-Methylguanine-DNA Methyltransferase; TPY09G7XIR / Fluorescein
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